Add command to (only) validate a training dataset #851

	# This workflow will install Python dependencies, run tests and lint with a single version of Python
	# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions

	name: Tests

	on:
	push:
	branches: [ main, 0.** ]
	pull_request:
	branches: [ main, 0.** ]
	schedule:
	- cron: "0 0 * * *"

	concurrency:
	group: ${{ github.workflow }}-${{ github.ref }}
	cancel-in-progress: true

	jobs:
	Linting:
	runs-on: ubuntu-latest

	steps:
	- uses: actions/checkout@v4
	- uses: actions/setup-python@v5
	with:
	python-version: "3.11"
	- uses: pre-commit/action@v3.0.1

	Test:
	needs: Linting
	name: ${{ matrix.env }} - python ${{ matrix.python }} - ${{ matrix.os }}
	timeout-minutes: 30
	runs-on: ${{ matrix.os }}
	defaults:
	run:
	shell: bash -l {0}
	strategy:
	fail-fast: false
	matrix:
	os: [ubuntu-latest]
	dev: [false]
	python: ["3.9", "3.10"]
	env: ["latest"]
	include:
	- env: latest
	os: macos-latest
	dev: false
	python: "3.10"
	- env: latest
	os: windows-latest
	dev: false
	python: "3.10"

	steps:
	- uses: actions/checkout@v4

	- name: Install Conda environment with Micromamba
	uses: mamba-org/setup-micromamba@v1
	with:
	micromamba-version: '1.5.1-0'
	environment-file: ci/envs/${{ matrix.env }}.yml
	create-args: >-
	python=${{ matrix.python }}
	${{ matrix.extra }}

	- name: Test
	run: \|
	pytest --color=yes --cov=orthoseg --cov-append --cov-report term-missing --cov-report xml tests/

	- uses: codecov/codecov-action@v4

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