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CRISPR position doesn't include last spacer #276

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oschwengers opened this issue Mar 6, 2024 · 0 comments
Closed

CRISPR position doesn't include last spacer #276

oschwengers opened this issue Mar 6, 2024 · 0 comments
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v1.9.3

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@oschwengers
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For some reasons, Pilcer-CR does not include the array's last spacer in the position of the entire array:

contig_1	PILER-CR	CRISPR	20141	20306	.	?	.	ID=AAAAAAAAAA_1;Name=CRISPR array with 3 repeats of length 22, consensus sequence CGGGGCTGAAGGAACTGGCCGC and spacer length 50;product=CRISPR array with 3 repeats of length 22, consensus sequence CGGGGCTGAAGGAACTGGCCGC and spacer length 50
contig_1	PILER-CR	crispr-repeat	20141	20162	.	?	.	ID=AAAAAAAAAA_1_repeat_1
contig_1	PILER-CR	crispr-spacer	20163	20212	.	?	.	ID=AAAAAAAAAA_1_spacer_1;sequence=ACTCGGGGGCCTGAAGGAACTGGACCTTTCCGCCACCAAGGTCACTGATG
contig_1	PILER-CR	crispr-repeat	20213	20234	.	?	.	ID=AAAAAAAAAA_1_repeat_2
contig_1	PILER-CR	crispr-spacer	20235	20284	.	?	.	ID=AAAAAAAAAA_1_spacer_2;sequence=CCTCCGGGACCTGCAGACGTTGAACCTCCACGGCACGAGGCTGACAGGGA
contig_1	PILER-CR	crispr-repeat	20285	20306	.	?	.	ID=AAAAAAAAAA_1_repeat_3
contig_1	PILER-CR	crispr-spacer	20307	20356	.	?	.	ID=AAAAAAAAAA_1_spacer_3;sequence=GCTGCATGACTTGCGAGAACTGGACCTCTCCATGAGCGACGTGACGGACG
@oschwengers oschwengers added the bug Something isn't working label Mar 6, 2024
@oschwengers oschwengers self-assigned this Mar 6, 2024
@oschwengers oschwengers added this to the v1.9.3 milestone Mar 6, 2024
oschwengers added a commit that referenced this issue Mar 6, 2024
@oschwengers
fix wrong CRISPR array stop position #276
4e3b80e
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