v1.1 - INSDC submission & annotation of MAGs: Hey! Ho! Let's go
This is the first minor release (v1.1) introducing several new features, many improvements and countless bug fixes.
Compatible database scheme version: 3 v3.0
New features:
- add new
--compliant
option for INSDC genome submissions: #69 (Thanks @michoug) - introduce PSCCs (UniRef50) as a fallback if PSCs (UniRef90) are not detected, greatly improving the annotation of less represented species and metagenome-assembled genomes (MAGs): 84c808f
- export nucleotide sequences: #57 (Thanks @mcroxen)
- revise suspect CDS product names: f85970b
Improvements:
- various improvements and fixes in GFF3, GenBank and EMBL files to adhere to INSDC specs: #69
- improve internal DB download: bdd665a
- use Diamond version v2.0.11 and its
--fast
option: c82f4e2 19c95d8 (Thanks to @bbuchfink for bbuchfink/diamond#419) - use stable CLI progress library alive-progress 0ac5625
- improve GFF3 output regarding GFF3 specs: 697121f
- store AMRFinderPlus DB within the Bakta DB directory: 04ff7b0 (Thanks to @LuisFF)
- redirect BAKTA-TMP directory to AMRFinderPlus to prevent stale files: 26f81fc
- detect & mark tmRNA on sequence edges: 782f640
- adhere to translation table in tmRNA prediction: 450d6b7
Bug fixes: