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update db v1.1.0 links
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oschwengers committed Aug 2, 2019
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14 changes: 7 additions & 7 deletions README.md
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Expand Up @@ -75,7 +75,7 @@ All files are prefixed (`<prefix>`) as the input genome fasta file.
Platon can be installed/used in 2 different ways.

In all cases, the custom database must be downloaded which we provide for download:
[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.3349652.svg)](https://doi.org/10.5281/zenodo.3349652)
[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.3349651.svg)](https://doi.org/10.5281/zenodo.3349651)


### GitHub
Expand All @@ -85,7 +85,7 @@ In all cases, the custom database must be downloaded which we provide for downlo
Example:
```
$ git clone git@github.com:oschwengers/platon.git
$ wget https://zenodo.org/record/3349652/files/db.tar.gz
$ wget https://zenodo.org/record/3358926/files/db.tar.gz
$ tar -xzf db.tar.gz
$ rm db.tar.gz
$ platon/bin/platon --db ./db genome.fasta
Expand All @@ -96,7 +96,7 @@ Platon will automatically recognise it and thus, the database path doesn't need
to be specified:
```
$ git clone git@github.com:oschwengers/platon.git
$ wget https://zenodo.org/record/3349652/files/db.tar.gz
$ wget https://zenodo.org/record/3358926/files/db.tar.gz
$ tar -xzf db.tar.gz
$ rm db.tar.gz
$ mv db/ platon
Expand All @@ -110,7 +110,7 @@ $ platon/bin/platon genome.fasta
Example:
```
$ conda install -c conda-forge -c bioconda -c defaults platon
$ wget https://zenodo.org/record/3349652/files/db.tar.gz
$ wget https://zenodo.org/record/3358926/files/db.tar.gz
$ tar -xzf db.tar.gz
$ rm db.tar.gz
$ platon --db ./db genome.fasta
Expand All @@ -124,7 +124,7 @@ $ platon --db ./db genome.fasta
Platon/database (1./2.):
```
$ pip3 install cb-platon
$ wget https://zenodo.org/record/3349652/files/db.tar.gz
$ wget https://zenodo.org/record/3358926/files/db.tar.gz
$ tar -xzf db.tar.gz
$ rm db.tar.gz
$ platon --db ./db genome.fasta
Expand Down Expand Up @@ -181,8 +181,8 @@ Platon depends on a custom database based on MPS, RDS, RefSeq Plasmid database,
PlasmidFinder db as well as custom HMM models. This database based on
RefSeq release 95 can be downloaded here:
(zipped 1.8 Gb, unzipped 2.6 Gb)
- [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.3349652.svg)](https://doi.org/10.5281/zenodo.3349652)
- [https://zenodo.org/record/3349652/files/db.tar.gz](https://zenodo.org/record/3349652/files/db.tar.gz)
[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.3349651.svg)](https://doi.org/10.5281/zenodo.3349651)
- [https://zenodo.org/record/3358926/files/db.tar.gz](https://zenodo.org/record/3358926/files/db.tar.gz)

## Dependencies
Platon was developed and tested in Python 3.5 and depends on BioPython (>=1.71).
Expand Down

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