Deleted the Homo_sapiens_test database because it is now expected tha…

…t the users will download the test database from the webserver downloads page
ostrokach · May 4, 2015 · 39abdcf · 39abdcf
1 parent a1ae94f
commit 39abdcf
Show file tree

Hide file tree

Showing 14 changed files with 3 additions and 537,084 deletions.
diff --git a/database/Homo_sapiens_test/domain.tsv b/database/Homo_sapiens_test/domain.tsv
diff --git a/database/Homo_sapiens_test/domain_contact.tsv b/database/Homo_sapiens_test/domain_contact.tsv
diff --git a/database/Homo_sapiens_test/provean.tsv b/database/Homo_sapiens_test/provean.tsv
diff --git a/database/Homo_sapiens_test/uniprot_domain.tsv b/database/Homo_sapiens_test/uniprot_domain.tsv
diff --git a/database/Homo_sapiens_test/uniprot_domain_model.tsv b/database/Homo_sapiens_test/uniprot_domain_model.tsv
diff --git a/database/Homo_sapiens_test/uniprot_domain_mutation.tsv b/database/Homo_sapiens_test/uniprot_domain_mutation.tsv
diff --git a/database/Homo_sapiens_test/uniprot_domain_pair.tsv b/database/Homo_sapiens_test/uniprot_domain_pair.tsv
diff --git a/database/Homo_sapiens_test/uniprot_domain_pair_model.tsv b/database/Homo_sapiens_test/uniprot_domain_pair_model.tsv
diff --git a/database/Homo_sapiens_test/uniprot_domain_pair_mutation.tsv b/database/Homo_sapiens_test/uniprot_domain_pair_mutation.tsv
diff --git a/database/Homo_sapiens_test/uniprot_domain_pair_template.tsv b/database/Homo_sapiens_test/uniprot_domain_pair_template.tsv
diff --git a/database/Homo_sapiens_test/uniprot_domain_template.tsv b/database/Homo_sapiens_test/uniprot_domain_template.tsv
diff --git a/database/Homo_sapiens_test/uniprot_sequence.tsv b/database/Homo_sapiens_test/uniprot_sequence.tsv
diff --git a/elaspic/elaspic_database.py b/elaspic/elaspic_database.py
@@ -6,7 +6,6 @@
 from __future__ import unicode_literals
 
 import os
-import random
 import argparse
 import subprocess
 from contextlib import contextmanager
@@ -67,17 +66,17 @@ def load_data_to_database(args):
 
 
 def test_database(args):
-    from elaspic import test_elaspic
+    from elaspic import elaspic_testing
     if args.mutation_type in ['domain', 'both']:
         print('*' * 80)
         print('Running a sample domain mutation...')
-        test_uniprot_domain = test_elaspic.TestUniprotDomain()
+        test_uniprot_domain = elaspic_testing.TestUniprotDomain()
         test_uniprot_domain.setup_class(uniprot_domain_id=args.uniprot_domain_id)
         test_uniprot_domain.test()
     if args.mutation_type in ['interface', 'both']:   
         print('*' * 80)
         print('Running a sample interface mutation...')
-        test_uniprot_domain_pair = test_elaspic.TestUniprotDomainPair()
+        test_uniprot_domain_pair = elaspic_testing.TestUniprotDomainPair()
         test_uniprot_domain_pair.setup_class(uniprot_domain_pair_id=args.uniprot_domain_pair_id)
         test_uniprot_domain_pair.test()
 

diff --git a/elaspic/test_elaspic.py b/elaspic/test_elaspic.py