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Release 1.2.2 #115

Merged
merged 28 commits into from
Aug 16, 2019
Merged

Release 1.2.2 #115

merged 28 commits into from
Aug 16, 2019

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alattner
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dnouri and others added 28 commits May 23, 2019 15:02
Also, improve the installation sequence: We now run "python setup.py
dev" after installing requirements.txt, which avoids double
installation of dependencies.
Fix issue with installing certifi on Travis
If ``PALLADIUM_CONFIG`` is not set, Palladium will try to find a
configuration file at these locations:

- ``palladium-config.py``
- ``etc/palladium-config.py``
Add a few default locations for the Palladium config file
In pld-fit, free training data memory before loading any test data
Update the tutorial to include `return_train_score` in the config,
since the output includes it.
It's a very small and cosmetic change, but the effect is that, if you
specify 'scoring' both in 'grid_search' and on a global level, you
will now see a ValueError without seeing a warning that tells you to
move 'scoring' to the top level.
Table relies on pandas.read_table, which is deprecated.  Also, CSV as
a name is more intuitive.
__copy__ configuration directive now accepts a __default__
This is warning that was previously triggered:

  requests.exceptions.FileModeWarning: Requests has determined the
  content-length for this request using the binary size of the file:
  however, the file has been opened in text mode (i.e. without the 'b'
  flag in the mode). This may lead to an incorrect content-length. In
  Requests 3.0, support will be removed for files in text mode.
Good combination is rpy2==2.9.4 and pandas==0.23.4
Update requirements and fix deprecation warnings and spurious test errors
More tests for config __default__ directive added in PR #109
…r-example

Add configuration example that uses Bayesian hyperparam optimization
@alattner alattner merged commit 52d0aed into master Aug 16, 2019
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2 participants