RE: Masking LTR

[Malabady]

Hey
I want to confirm that the LTR library (*.fa.LTRlib.fa) is the correct library file that I can use with RepeatMasker to mask the genome. If this is not the correct library file, what is the correct one?

Best,

[oushujun]

Yes this is the correct file. Shujun

…

On Tue, Jan 24, 2023 at 5:05 PM Malabady ***@***.***> wrote: Hey I want to confirm that the LTR library (*.fa.LTRlib.fa) is the correct library file that I can use with RepeatMasker to mask the genome. If this is not the correct library file, what is the correct one? Best, — Reply to this email directly, view it on GitHub <#144>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ABNX4NCYOEGSHE3C2IMUFZTWUBGZ5ANCNFSM6AAAAAAUFTVZBE> . You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>

[Malabady]

Many thanks. From: Shujun Ou ***@***.***> Date: Tuesday, January 24, 2023 at 10:40 PM To: oushujun/LTR_retriever ***@***.***> Cc: Magdy S Alabady ***@***.***>, Author ***@***.***> Subject: Re: [oushujun/LTR_retriever] RE: Masking LTR (Issue #144) [EXTERNAL SENDER - PROCEED CAUTIOUSLY] Yes this is the correct file. Shujun

On Tue, Jan 24, 2023 at 5:05 PM Malabady ***@***.***> wrote: Hey I want to confirm that the LTR library (*.fa.LTRlib.fa) is the correct library file that I can use with RepeatMasker to mask the genome. If this is not the correct library file, what is the correct one? Best, — Reply to this email directly, view it on GitHub <#144>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ABNX4NCYOEGSHE3C2IMUFZTWUBGZ5ANCNFSM6AAAAAAUFTVZBE> . You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>

— Reply to this email directly, view it on GitHub<#144 (comment)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/ACHNEMA7ELLOSBPO5BWMG4LWUCODJANCNFSM6AAAAAAUFTVZBE>. You are receiving this because you authored the thread.Message ID: ***@***.***>