BUG update genewise dispersions and fitted dispersions of refitted genes #274
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BorisMuzellec
requested review from
maikia,
arthurPignetOwkin and
mandreux-owkin
as code owners
umarteauowkin
approved these changes
Apr 24, 2024
|
LGTM, thanks @BorisMuzellec |
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What does your PR implement? Be specific.
Currently, when outlier genes are refitted, only
"_normed_means","LFC"and"dispersions"are updated in the fields of theDeseqDataSet, but not"genewise_dispersions"and"fitted_dispersions".This has limited or no impact on the remainder of the code, but interferes with visualisation (e.g. with
plot_dispersions().This PR fixes this by also updating
"genewise_dispersions"and"fitted_dispersions".Example
Before:
After: