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ENH Remove count DataFrame from calculate_cooks #292

Merged
merged 27 commits into from
Jul 2, 2024
Merged

ENH Remove count DataFrame from calculate_cooks #292

merged 27 commits into from
Jul 2, 2024

Commits on May 30, 2024

  1. Poscount implementation & diag(XXT) optimization

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  3. Add docstring for linter

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  5. Wald weighting optimization

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Commits on Jun 2, 2024

  1. Refactor calculate_cooks to ndarray from DataFrame

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    asistradition committed Jun 2, 2024
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  2. Minor cleanup for cook's distances

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    asistradition committed Jun 2, 2024
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Commits on Jun 10, 2024

  1. Improve comments and add tests for size factors

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  3. Fix for linter line width

    @asistradition
    asistradition committed Jun 10, 2024
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  4. Fix incorrect type hints for mypy

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    asistradition committed Jun 10, 2024
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Commits on Jun 11, 2024

  1. Merge branch 'owkin:main' into main

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  2. Memory optimization for cook's distances

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    asistradition committed Jun 11, 2024
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  3. Add comments for clarity

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    asistradition committed Jun 11, 2024
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  5. Doc notation fix

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    asistradition committed Jun 11, 2024
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  7. Add explicit cast for mypy

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Commits on Jul 1, 2024

  1. Merge branch 'owkin:main' into main

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  2. Add control_genes to fit_size_factors

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    asistradition committed Jul 1, 2024
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  3. Merge branch 'main' of github.com:asistradition/PyDESeq2

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  5. Replace pipe with Union

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    asistradition committed Jul 1, 2024
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Commits on Jul 2, 2024

  1. docs: add a doctring for the control_genes argument in `fit_size_fa… 

    …ctors`
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    BorisMuzellec committed Jul 2, 2024
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  2. docs: fix docstring for the control_genes argument in `fit_size_fac… 

    …tors`
    @BorisMuzellec
    BorisMuzellec committed Jul 2, 2024
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