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Ignore invalid axioms: property chains with one property #19

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gaurav opened this issue Oct 10, 2017 · 7 comments
Closed

Ignore invalid axioms: property chains with one property #19

gaurav opened this issue Oct 10, 2017 · 7 comments

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@gaurav
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gaurav commented Oct 10, 2017

I've been trying to reason over an ontology with JFact++. It works fine in jfact 1.2.4 from Maven, but when I try to upgrade to either 4.0.3 or 5.0.1, the ontology can still be loaded correctly:

Loaded ontology: Ontology(OntologyID(OntologyIRI(https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#) VersionIRI())) [Axioms: 1040 Logical Axioms: 742] First 20 axioms: {Declaration(Class(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA ...

But reasoning fails with an odd exception:

Exception in thread "main" org.semanticweb.owlapi.reasoner.ReasonerInternalException: not enough elements in the n-ary element
at uk.ac.manchester.cs.jfact.helpers.NDLTree.(DLTree.java:517)
at uk.ac.manchester.cs.jfact.helpers.DLTreeFactory.buildTree(DLTreeFactory.java:583)
at uk.ac.manchester.cs.jfact.kernel.ExpressionTranslator.visit(ExpressionTranslator.java:334)
at uk.ac.manchester.cs.jfact.kernel.ExpressionTranslator.visit(ExpressionTranslator.java:72)
at uk.ac.manchester.cs.jfact.kernel.dl.ObjectRoleChain.accept(ObjectRoleChain.java:47)
at uk.ac.manchester.cs.jfact.kernel.OntologyLoader.visit(OntologyLoader.java:226)
at uk.ac.manchester.cs.jfact.kernel.dl.axioms.AxiomORoleSubsumption.accept(AxiomORoleSubsumption.java:41)
at uk.ac.manchester.cs.jfact.kernel.OntologyLoader.visitOntology(OntologyLoader.java:539)
at uk.ac.manchester.cs.jfact.kernel.ReasoningKernel.forceReload(ReasoningKernel.java:1898)
at uk.ac.manchester.cs.jfact.kernel.ReasoningKernel.processKB(ReasoningKernel.java:2012)
at uk.ac.manchester.cs.jfact.kernel.ReasoningKernel.isKBConsistent(ReasoningKernel.java:821)
at uk.ac.manchester.cs.jfact.JFactReasoner.isConsistent(JFactReasoner.java:377)
at uk.ac.manchester.cs.jfact.JFactReasoner.checkConsistency(JFactReasoner.java:389)
at uk.ac.manchester.cs.jfact.JFactReasoner.getInstances(JFactReasoner.java:674)
at org.phyloref.jphyloref.commands.TestCommand.execute(TestCommand.java:118)
at org.phyloref.jphyloref.JPhyloRef.execute(JPhyloRef.java:66)
at org.phyloref.jphyloref.JPhyloRef.main(JPhyloRef.java:33)

The reference to TestCommand.java:118 corresponds to line 124 in the Github version, where I'm trying to getInstances from the reasoner.

Any idea what I'm doing wrong? Thanks for your attention!
@ignazio1977
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Your code is correct, this is either due to a particular structure in the ontology or a reasoner bug.

I'll debug the issue once I get a chance, thanks for providing an example.

@ignazio1977
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For the record, if the issue is in the ontology I suspect it might be a role chain with only one property in it.

@ignazio1977
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The bug cannot be reproduced in the latest trunk.

I have tried running profile check with the OWLAPI version required with JFact 5.0.1 and got a null pointer exception. With the latest trunk, that's not repeatable either. Looks like the bugs this ontology triggered have been fixed in more recent versions.

Incidentally the ontology has violations of the OWL2 DL profile - you might want to check if it's worth fixing them.

Not enough operands; at least two needed: ObjectUnionOf(ObjectUnionOf(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref6_specifier4> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/CDAO_0000174> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref6_specifier4>))) [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref6> ObjectIntersectionOf(ObjectUnionOf(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref6_specifier1> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/CDAO_0000174> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref6_specifier1>)) ObjectUnionOf(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref6_specifier2> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/CDAO_0000174> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref6_specifier2>)) ObjectSomeValuesFrom(<http://phyloinformatics.net/phyloref.owl#has_Sibling> ObjectUnionOf(ObjectUnionOf(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref6_specifier4> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/CDAO_0000174> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref6_specifier4>))))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Cannot pun between properties: <http://phylotastic.org/terms/tnrs.rdf#matchedName> [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref5_specifier2> ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Syrrhopodon involutus"^^xsd:string))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Use of undeclared annotation property: <http://purl.org/opentree/nexson#dataDeposit> in annotation [Annotation(<http://purl.org/opentree/nexson#dataDeposit> "https://treebase.org/treebase-web/search/study/taxa.html?id=1624&treeid=748"^^xsd:string) in AnnotationAssertion(<http://purl.org/opentree/nexson#dataDeposit> _:genid207 "https://treebase.org/treebase-web/search/study/taxa.html?id=1624&treeid=748"^^xsd:string)]
Use of undeclared annotation property: <http://example.org/TBD#labeledNodeData> in annotation [Annotation(<http://example.org/TBD#labeledNodeData> _:genid257) in AnnotationAssertion(<http://example.org/TBD#labeledNodeData> _:genid207 _:genid257)]
Use of undeclared class: <http://example.org/TBD#ExternalSpecifier> [ClassAssertion(<http://example.org/TBD#ExternalSpecifier> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref9_specifier3>) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Cannot pun between properties: <http://phylotastic.org/terms/tnrs.rdf#matchedName> [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref7_specifier3> ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Syrrhopodon muelleri"^^xsd:string))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Cannot pun between properties: <http://phylotastic.org/terms/tnrs.rdf#matchedName> [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref6_specifier1> ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Syrrhopodon banksii"^^xsd:string))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Use of undeclared class: <http://example.org/TBD#InternalSpecifier> [ClassAssertion(<http://example.org/TBD#InternalSpecifier> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref4_specifier1>) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Use of undeclared annotation property: <http://example.org/TBD#labeledNodeData> in annotation [Annotation(<http://example.org/TBD#labeledNodeData> _:genid237) in AnnotationAssertion(<http://example.org/TBD#labeledNodeData> _:genid207 _:genid237)]
Use of undeclared class: <http://example.org/TBD#InternalSpecifier> [ClassAssertion(<http://example.org/TBD#InternalSpecifier> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref11_specifier2>) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Use of undeclared annotation property: <http://example.org/TBD#labeledNodeData> in annotation [Annotation(<http://example.org/TBD#labeledNodeData> _:genid222) in AnnotationAssertion(<http://example.org/TBD#labeledNodeData> _:genid207 _:genid222)]
Use of undeclared annotation property: <http://example.org/TBD#phylorefs> in annotation [Annotation(<http://example.org/TBD#phylorefs> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref11>) in AnnotationAssertion(<http://example.org/TBD#phylorefs> _:genid207 <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref11>)]
Cannot pun between properties: <http://phylotastic.org/terms/tnrs.rdf#matchedName> [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref1_specifier1> ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Syrrhopodon gardneri"^^xsd:string))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Use of undeclared annotation property: <http://example.org/TBD#manchesterSyntax> in annotation [Annotation(<http://example.org/TBD#manchesterSyntax> "Node and ((Node that tnrs:matchedName value \"Syrrhopodon banksii\"^^xsd:string) or has_Descendant some (Node that tnrs:matchedName value \"Syrrhopodon banksii\"^^xsd:string) and (Node that tnrs:matchedName value \"Syrrhopodon involutus\"^^xsd:string) or has_Descendant some (Node that tnrs:matchedName value \"Syrrhopodon involutus\"^^xsd:string) and  and (has_Sibling some ((Node that tnrs:matchedName value \"Syrrhopodon trachyphyllus\"^^xsd:string) or has_Descendant some (Node that tnrs:matchedName value \"Syrrhopodon trachyphyllus\"^^xsd:string))))"^^xsd:string) in AnnotationAssertion(<http://example.org/TBD#manchesterSyntax> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref6> "Node and ((Node that tnrs:matchedName value \"Syrrhopodon banksii\"^^xsd:string) or has_Descendant some (Node that tnrs:matchedName value \"Syrrhopodon banksii\"^^xsd:string) and (Node that tnrs:matchedName value \"Syrrhopodon involutus\"^^xsd:string) or has_Descendant some (Node that tnrs:matchedName value \"Syrrhopodon involutus\"^^xsd:string) and  and (has_Sibling some ((Node that tnrs:matchedName value \"Syrrhopodon trachyphyllus\"^^xsd:string) or has_Descendant some (Node that tnrs:matchedName value \"Syrrhopodon trachyphyllus\"^^xsd:string))))"^^xsd:string)]
Use of undeclared class: <http://example.org/TBD#InternalSpecifier> [ClassAssertion(<http://example.org/TBD#InternalSpecifier> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref3_specifier1>) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Use of undeclared class: <http://example.org/TBD#InternalSpecifier> [ClassAssertion(<http://example.org/TBD#InternalSpecifier> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref5_specifier1>) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Use of undeclared annotation property: <http://example.org/TBD#labeledNodeData> in annotation [Annotation(<http://example.org/TBD#labeledNodeData> _:genid271) in AnnotationAssertion(<http://example.org/TBD#labeledNodeData> _:genid207 _:genid271)]
Use of undeclared class: <http://example.org/TBD#Publication> [ClassAssertion(<http://example.org/TBD#Publication> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Use of undeclared annotation property: <http://example.org/TBD#labeledNodeData> in annotation [Annotation(<http://example.org/TBD#labeledNodeData> _:genid264) in AnnotationAssertion(<http://example.org/TBD#labeledNodeData> _:genid207 _:genid264)]
Use of undeclared annotation property: <http://purl.org/dc/terms/creator> in annotation [Annotation(<http://purl.org/dc/terms/creator> "Sean Bechhofer"^^xsd:string) in null]
Use of undeclared class: rdf:List [ObjectPropertyRange(<http://www.w3.org/2004/02/skos/core#memberList> rdf:List) in OntologyID(OntologyIRI(<http://www.w3.org/2004/02/skos/core>) VersionIRI(<null>))]
Use of undeclared annotation property: <http://example.org/TBD#labeledNodeData> in annotation [Annotation(<http://example.org/TBD#labeledNodeData> _:genid272) in AnnotationAssertion(<http://example.org/TBD#labeledNodeData> _:genid207 _:genid272)]
Cannot pun between properties: <http://phylotastic.org/terms/tnrs.rdf#matchedName> [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref11_specifier2> ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Leucophanes seychellarum"^^xsd:string))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Not enough operands; at least two needed: ObjectUnionOf(ObjectUnionOf(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref7_specifier3> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/CDAO_0000174> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref7_specifier3>))) [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref7> ObjectIntersectionOf(ObjectUnionOf(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref7_specifier1> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/CDAO_0000174> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref7_specifier1>)) ObjectUnionOf(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref7_specifier2> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/CDAO_0000174> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref7_specifier2>)) ObjectSomeValuesFrom(<http://phyloinformatics.net/phyloref.owl#has_Sibling> ObjectUnionOf(ObjectUnionOf(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref7_specifier3> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/CDAO_0000174> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref7_specifier3>))))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Use of undeclared annotation property: <http://example.org/TBD#asNewickString> in annotation [Annotation(<http://example.org/TBD#asNewickString> "((((((((((('Arthrocormus schimperi',('Exostratum blumii 243','Exostratum blumii 245')Exostratum),('Exodictyon incrassatum',(('Leucophanes seychellarum',('Leucophanes octoblepharoides','Leucophanes albescens'),'Leucophanes glaucum'),'Syrrhopodon confertus')Leucophanes))Albifolium,'Syrrhopodon muelleri'),'Syrrhopodon perarmatus'),(('Syrrhopodon ciliatus',('Syrrhopodon albovaginatus 446','Syrrhopodon albovaginatus 162')),((('Syrrhopodon tortillis','Syrrhopodon leprieurii'),'Syrrhopodon prolifer'),('Syrrhopodon parasiticus','Syrrhopodon trachyphyllus',('Syrrhopodon banksii','Syrrhopodon involutus')Leucophanella)))Trachymitrium),('Syrrhopodon armatus','Syrrhopodon fimbriatulus')),((((('Mitthyridium obtusifolium','Mitthyridium constrictum'),'Mitthyridium fasciculatum'),('Mitthyridium undulatum','Mitthyridium jungquilianum'))Mitthyridium_as_per_paper,'Syrrhopodon mahensis')Mitthyridium,('Syrrhopodon tristichus',('Syrrhopodon croceus','Syrrhopodon apertus','Syrrhopodon fissipapillatus'))))Syrrhopodon,(('Syrrhopodon incompletus',((((('Calymperes palisotii 159','Calymperes palisotii 180'),'Calymperes motleyi'),('Calymperes erosum','Calymperes robinsonii')),(('Calymperes tenerum','Calymperes subintegrum',('Calymperes tuatomuense','Calymperes pseudopodianum'),'Calymperes hispidium'),'Calymperes moluccense')),((('Calymperes tahitense 320','Calymperes tahitense 115'),'Calymperes lonchophyllum'),(('Calymperes afzelii 179','Calymperes afzelii 165'),'Calymperes graffeanum')))),'Syrrhopodon mauritianus')Calymperes),'Syrrhopodon japonicus'),'Syrrhopodon gardneri')Calymperaceae,('Octoblepharum Moorea 445','Octoblepharum albidum')Octoblepharum);"^^xsd:string) in AnnotationAssertion(<http://example.org/TBD#asNewickString> _:genid207 "((((((((((('Arthrocormus schimperi',('Exostratum blumii 243','Exostratum blumii 245')Exostratum),('Exodictyon incrassatum',(('Leucophanes seychellarum',('Leucophanes octoblepharoides','Leucophanes albescens'),'Leucophanes glaucum'),'Syrrhopodon confertus')Leucophanes))Albifolium,'Syrrhopodon muelleri'),'Syrrhopodon perarmatus'),(('Syrrhopodon ciliatus',('Syrrhopodon albovaginatus 446','Syrrhopodon albovaginatus 162')),((('Syrrhopodon tortillis','Syrrhopodon leprieurii'),'Syrrhopodon prolifer'),('Syrrhopodon parasiticus','Syrrhopodon trachyphyllus',('Syrrhopodon banksii','Syrrhopodon involutus')Leucophanella)))Trachymitrium),('Syrrhopodon armatus','Syrrhopodon fimbriatulus')),((((('Mitthyridium obtusifolium','Mitthyridium constrictum'),'Mitthyridium fasciculatum'),('Mitthyridium undulatum','Mitthyridium jungquilianum'))Mitthyridium_as_per_paper,'Syrrhopodon mahensis')Mitthyridium,('Syrrhopodon tristichus',('Syrrhopodon croceus','Syrrhopodon apertus','Syrrhopodon fissipapillatus'))))Syrrhopodon,(('Syrrhopodon incompletus',((((('Calymperes palisotii 159','Calymperes palisotii 180'),'Calymperes motleyi'),('Calymperes erosum','Calymperes robinsonii')),(('Calymperes tenerum','Calymperes subintegrum',('Calymperes tuatomuense','Calymperes pseudopodianum'),'Calymperes hispidium'),'Calymperes moluccense')),((('Calymperes tahitense 320','Calymperes tahitense 115'),'Calymperes lonchophyllum'),(('Calymperes afzelii 179','Calymperes afzelii 165'),'Calymperes graffeanum')))),'Syrrhopodon mauritianus')Calymperes),'Syrrhopodon japonicus'),'Syrrhopodon gardneri')Calymperaceae,('Octoblepharum Moorea 445','Octoblepharum albidum')Octoblepharum);"^^xsd:string)]
Use of undeclared annotation property: <http://example.org/TBD#labeledNodeData> in annotation [Annotation(<http://example.org/TBD#labeledNodeData> _:genid270) in AnnotationAssertion(<http://example.org/TBD#labeledNodeData> _:genid207 _:genid270)]
Use of undeclared annotation property: <http://example.org/TBD#labeledNodeData> in annotation [Annotation(<http://example.org/TBD#labeledNodeData> _:genid247) in AnnotationAssertion(<http://example.org/TBD#labeledNodeData> _:genid207 _:genid247)]
Use of non-simple property in a restriction: ObjectMinCardinality(1 <http://purl.obolibrary.org/obo/CDAO_0000194> <http://purl.obolibrary.org/obo/CDAO_0000006>) [SubClassOf(<http://purl.obolibrary.org/obo/CDAO_0000140> ObjectMinCardinality(1 <http://purl.obolibrary.org/obo/CDAO_0000194> <http://purl.obolibrary.org/obo/CDAO_0000006>)) in OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/cdao.owl>) VersionIRI(<http://purl.obolibrary.org/obo/cdao/2013-02-01/cdao.owl>))]
Not enough operands; at least two needed: ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Syrrhopodon croceus"^^xsd:string))) [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref3_specifier1> ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Syrrhopodon croceus"^^xsd:string))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Use of undeclared class: <http://example.org/TBD#InternalSpecifier> [ClassAssertion(<http://example.org/TBD#InternalSpecifier> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref4_specifier2>) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Use of undeclared annotation property: <http://example.org/TBD#labeledNodeData> in annotation [Annotation(<http://example.org/TBD#labeledNodeData> _:genid259) in AnnotationAssertion(<http://example.org/TBD#labeledNodeData> _:genid207 _:genid259)]
Use of undeclared class: <http://example.org/TBD#InternalSpecifier> [ClassAssertion(<http://example.org/TBD#InternalSpecifier> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref3_specifier2>) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Use of undeclared annotation property: <http://example.org/TBD#labeledNodeData> in annotation [Annotation(<http://example.org/TBD#labeledNodeData> _:genid221) in AnnotationAssertion(<http://example.org/TBD#labeledNodeData> _:genid207 _:genid221)]
Cannot pun between properties: <http://phylotastic.org/terms/tnrs.rdf#matchedName> [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref4_specifier2> ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Mitthyridium undulatum"^^xsd:string))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Use of undeclared annotation property: <http://example.org/TBD#labeledNodeData> in annotation [Annotation(<http://example.org/TBD#labeledNodeData> _:genid214) in AnnotationAssertion(<http://example.org/TBD#labeledNodeData> _:genid207 _:genid214)]
Not enough operands; at least two needed: ObjectUnionOf(ObjectUnionOf(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref9_specifier3> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/CDAO_0000174> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref9_specifier3>))) [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref9> ObjectIntersectionOf(ObjectUnionOf(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref9_specifier1> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/CDAO_0000174> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref9_specifier1>)) ObjectSomeValuesFrom(<http://phyloinformatics.net/phyloref.owl#has_Sibling> ObjectUnionOf(ObjectUnionOf(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref9_specifier3> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/CDAO_0000174> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref9_specifier3>))))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Use of undeclared annotation property: <http://example.org/TBD#labeledNodeData> in annotation [Annotation(<http://example.org/TBD#labeledNodeData> _:genid249) in AnnotationAssertion(<http://example.org/TBD#labeledNodeData> _:genid207 _:genid249)]
Not enough operands; at least two needed: ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Leucophanes octoblepharoides"^^xsd:string))) [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref11_specifier1> ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Leucophanes octoblepharoides"^^xsd:string))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Use of undeclared annotation property: <http://example.org/TBD#labeledNodeData> in annotation [Annotation(<http://example.org/TBD#labeledNodeData> _:genid240) in AnnotationAssertion(<http://example.org/TBD#labeledNodeData> _:genid207 _:genid240)]
Use of undeclared class: <http://example.org/TBD#InternalSpecifier> [ClassAssertion(<http://example.org/TBD#InternalSpecifier> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref7_specifier1>) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Use of undeclared annotation property: <http://example.org/TBD#phylorefs> in annotation [Annotation(<http://example.org/TBD#phylorefs> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref10>) in AnnotationAssertion(<http://example.org/TBD#phylorefs> _:genid207 <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref10>)]
Use of undeclared annotation property: <http://example.org/TBD#labeledNodeData> in annotation [Annotation(<http://example.org/TBD#labeledNodeData> _:genid273) in AnnotationAssertion(<http://example.org/TBD#labeledNodeData> _:genid207 _:genid273)]
Use of undeclared annotation property: <http://purl.org/dc/terms/creator> in annotation [Annotation(<http://purl.org/dc/terms/creator> "Alistair Miles"^^xsd:string) in null]
Use of undeclared annotation property: <http://example.org/TBD#labeledNodeData> in annotation [Annotation(<http://example.org/TBD#labeledNodeData> _:genid235) in AnnotationAssertion(<http://example.org/TBD#labeledNodeData> _:genid207 _:genid235)]
Use of undeclared annotation property: <http://purl.org/opentree/nexson#studyPublication> in annotation [Annotation(<http://purl.org/opentree/nexson#studyPublication> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2>) in null]
Use of undeclared annotation property: <http://example.org/TBD#phylorefs> in annotation [Annotation(<http://example.org/TBD#phylorefs> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref1>) in AnnotationAssertion(<http://example.org/TBD#phylorefs> _:genid207 <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref1>)]
Use of undeclared class: <http://example.org/TBD#ExternalSpecifier> [ClassAssertion(<http://example.org/TBD#ExternalSpecifier> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref6_specifier4>) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Cannot pun between properties: <http://phylotastic.org/terms/tnrs.rdf#matchedName> [null in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Use of undeclared class: <http://example.org/TBD#ExternalSpecifier> [ClassAssertion(<http://example.org/TBD#ExternalSpecifier> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref8_specifier2>) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Use of undeclared annotation property: <http://example.org/TBD#labeledNodeData> in annotation [Annotation(<http://example.org/TBD#labeledNodeData> _:genid223) in AnnotationAssertion(<http://example.org/TBD#labeledNodeData> _:genid207 _:genid223)]
Use of undeclared annotation property: <http://example.org/TBD#labeledNodeData> in annotation [Annotation(<http://example.org/TBD#labeledNodeData> _:genid261) in AnnotationAssertion(<http://example.org/TBD#labeledNodeData> _:genid207 _:genid261)]
Use of undeclared class: <http://example.org/TBD#InternalSpecifier> [ClassAssertion(<http://example.org/TBD#InternalSpecifier> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref2_specifier2>) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Use of undeclared annotation property: <http://example.org/TBD#labeledNodeData> in annotation [Annotation(<http://example.org/TBD#labeledNodeData> _:genid256) in AnnotationAssertion(<http://example.org/TBD#labeledNodeData> _:genid207 _:genid256)]
Use of undeclared annotation property: <http://example.org/TBD#manchesterSyntax> in annotation [Annotation(<http://example.org/TBD#manchesterSyntax> "Node and ((Node that tnrs:submittedName value \"Exodictyon incrassatum (Mitt.) Cardot\"^^xsd:string or tnrs:matchedName value \"Exodictyon incrassatum\"^^xsd:string) or has_Descendant some (Node that tnrs:submittedName value \"Exodictyon incrassatum (Mitt.) Cardot\"^^xsd:string or tnrs:matchedName value \"Exodictyon incrassatum\"^^xsd:string) and (has_Sibling some ((Node that tnrs:matchedName value \"Leucophanes octoblepharoides\"^^xsd:string) or has_Descendant some (Node that tnrs:matchedName value \"Leucophanes octoblepharoides\"^^xsd:string))))"^^xsd:string) in AnnotationAssertion(<http://example.org/TBD#manchesterSyntax> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref10> "Node and ((Node that tnrs:submittedName value \"Exodictyon incrassatum (Mitt.) Cardot\"^^xsd:string or tnrs:matchedName value \"Exodictyon incrassatum\"^^xsd:string) or has_Descendant some (Node that tnrs:submittedName value \"Exodictyon incrassatum (Mitt.) Cardot\"^^xsd:string or tnrs:matchedName value \"Exodictyon incrassatum\"^^xsd:string) and (has_Sibling some ((Node that tnrs:matchedName value \"Leucophanes octoblepharoides\"^^xsd:string) or has_Descendant some (Node that tnrs:matchedName value \"Leucophanes octoblepharoides\"^^xsd:string))))"^^xsd:string)]
Use of undeclared annotation property: <http://example.org/TBD#labeledNodeData> in annotation [Annotation(<http://example.org/TBD#labeledNodeData> _:genid238) in AnnotationAssertion(<http://example.org/TBD#labeledNodeData> _:genid207 _:genid238)]
Use of undeclared annotation property: <http://example.org/TBD#labeledNodeData> in annotation [Annotation(<http://example.org/TBD#labeledNodeData> _:genid231) in AnnotationAssertion(<http://example.org/TBD#labeledNodeData> _:genid207 _:genid231)]
Use of undeclared annotation property: <http://purl.org/dc/terms/title> in annotation [Annotation(<http://purl.org/dc/terms/title> "SKOS Vocabulary"@en) in null]
Use of undeclared annotation property: <http://example.org/TBD#labeledNodeData> in annotation [Annotation(<http://example.org/TBD#labeledNodeData> _:genid226) in AnnotationAssertion(<http://example.org/TBD#labeledNodeData> _:genid207 _:genid226)]
Use of undeclared annotation property: <http://example.org/TBD#labeledNodeData> in annotation [Annotation(<http://example.org/TBD#labeledNodeData> _:genid215) in AnnotationAssertion(<http://example.org/TBD#labeledNodeData> _:genid207 _:genid215)]
Use of undeclared annotation property: <http://example.org/TBD#labeledNodeData> in annotation [Annotation(<http://example.org/TBD#labeledNodeData> _:genid228) in AnnotationAssertion(<http://example.org/TBD#labeledNodeData> _:genid207 _:genid228)]
Use of undeclared class: <http://example.org/TBD#ExternalSpecifier> [ClassAssertion(<http://example.org/TBD#ExternalSpecifier> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref4_specifier3>) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Not enough operands; at least two needed: ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Mitthyridium undulatum"^^xsd:string))) [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref4_specifier2> ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Mitthyridium undulatum"^^xsd:string))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Cannot pun between properties: <http://phylotastic.org/terms/tnrs.rdf#matchedName> [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref1_specifier3> ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Octoblepharum albidum"^^xsd:string))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Use of undeclared annotation property: <http://example.org/TBD#phylorefs> in annotation [Annotation(<http://example.org/TBD#phylorefs> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref7>) in AnnotationAssertion(<http://example.org/TBD#phylorefs> _:genid207 <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref7>)]
Use of undeclared annotation property: <http://example.org/TBD#labeledNodeData> in annotation [Annotation(<http://example.org/TBD#labeledNodeData> _:genid216) in AnnotationAssertion(<http://example.org/TBD#labeledNodeData> _:genid207 _:genid216)]
Cannot pun between properties: <http://phylotastic.org/terms/tnrs.rdf#matchedName> [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref9_specifier3> ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Arthrocormus schimperi"^^xsd:string))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Use of undeclared annotation property: <http://example.org/TBD#manchesterSyntax> in annotation [Annotation(<http://example.org/TBD#manchesterSyntax> "Node and ((Node that tnrs:matchedName value \"Leucophanes octoblepharoides\"^^xsd:string) or has_Descendant some (Node that tnrs:matchedName value \"Leucophanes octoblepharoides\"^^xsd:string) and (Node that tnrs:matchedName value \"Leucophanes seychellarum\"^^xsd:string) or has_Descendant some (Node that tnrs:matchedName value \"Leucophanes seychellarum\"^^xsd:string) and (has_Sibling some ((Node that tnrs:matchedName value \"Exodictyon incrassatum\"^^xsd:string) or has_Descendant some (Node that tnrs:matchedName value \"Exodictyon incrassatum\"^^xsd:string))))"^^xsd:string) in AnnotationAssertion(<http://example.org/TBD#manchesterSyntax> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref11> "Node and ((Node that tnrs:matchedName value \"Leucophanes octoblepharoides\"^^xsd:string) or has_Descendant some (Node that tnrs:matchedName value \"Leucophanes octoblepharoides\"^^xsd:string) and (Node that tnrs:matchedName value \"Leucophanes seychellarum\"^^xsd:string) or has_Descendant some (Node that tnrs:matchedName value \"Leucophanes seychellarum\"^^xsd:string) and (has_Sibling some ((Node that tnrs:matchedName value \"Exodictyon incrassatum\"^^xsd:string) or has_Descendant some (Node that tnrs:matchedName value \"Exodictyon incrassatum\"^^xsd:string))))"^^xsd:string)]
Use of undeclared annotation property: <http://example.org/TBD#manchesterSyntax> in annotation [Annotation(<http://example.org/TBD#manchesterSyntax> "Node and ((Node that tnrs:matchedName value \"Syrrhopodon gardneri\"^^xsd:string) or has_Descendant some (Node that tnrs:matchedName value \"Syrrhopodon gardneri\"^^xsd:string) and (Node that tnrs:matchedName value \"Leucophanes octoblepharoides\"^^xsd:string) or has_Descendant some (Node that tnrs:matchedName value \"Leucophanes octoblepharoides\"^^xsd:string) and (has_Sibling some ((Node that tnrs:matchedName value \"Octoblepharum albidum\"^^xsd:string) or has_Descendant some (Node that tnrs:matchedName value \"Octoblepharum albidum\"^^xsd:string))))"^^xsd:string) in AnnotationAssertion(<http://example.org/TBD#manchesterSyntax> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref1> "Node and ((Node that tnrs:matchedName value \"Syrrhopodon gardneri\"^^xsd:string) or has_Descendant some (Node that tnrs:matchedName value \"Syrrhopodon gardneri\"^^xsd:string) and (Node that tnrs:matchedName value \"Leucophanes octoblepharoides\"^^xsd:string) or has_Descendant some (Node that tnrs:matchedName value \"Leucophanes octoblepharoides\"^^xsd:string) and (has_Sibling some ((Node that tnrs:matchedName value \"Octoblepharum albidum\"^^xsd:string) or has_Descendant some (Node that tnrs:matchedName value \"Octoblepharum albidum\"^^xsd:string))))"^^xsd:string)]
Not enough operands; at least two needed: ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Mitthyridium fasciculatum"^^xsd:string))) [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref4_specifier1> ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Mitthyridium fasciculatum"^^xsd:string))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Use of undeclared annotation property: <http://example.org/TBD#asNewickString> in annotation [Annotation(<http://example.org/TBD#asNewickString> "(((((((((((Arthrocormus_schimperi,(Exostratum_blumii_243,Exostratum_blumii_245)Exostratum),(Exodictyon_incrassatum,((Leucophanes_seychellarum,(Leucophanes_octoblepharoides,Leucophanes_albescens),Leucophanes_glaucum),Syrrhopodon_confertus)Leucophanes))Albifolium,Syrrhopodon_muelleri),Syrrhopodon_perarmatus),((Syrrhopodon_ciliatus,(Syrrhopodon_albovaginatus_446,Syrrhopodon_albovaginatus_162)),(((Syrrhopodon_tortillis,Syrrhopodon_leprieurii),Syrrhopodon_prolifer),(Syrrhopodon_parasiticus,Syrrhopodon_trachyphyllus,(Syrrhopodon_banksii,Syrrhopodon_involutus)Leucophanella)))Trachymitrium),(Syrrhopodon_armatus,Syrrhopodon_fimbriatulus)),(((((Mitthyridium_obtusifolium,Mitthyridium_constrictum),Mitthyridium_fasciculatum),(Mitthyridium_undulatum,Mitthyridium_jungquilianum))Mitthyridium_as_per_paper,Syrrhopodon_mahensis)Mitthyridium,(Syrrhopodon_tristichus,(Syrrhopodon_croceus,Syrrhopodon_apertus,Syrrhopodon_fissipapillatus))))Syrrhopodon,((Syrrhopodon_incompletus,(((((Calymperes_palisotii_159,Calymperes_palisotii_180),Calymperes_motleyi),(Calymperes_erosum,Calymperes_robinsonii)),((Calymperes_tenerum,Calymperes_subintegrum,(Calymperes_tuatomuense,Calymperes_pseudopodianum),Calymperes_hispidium),Calymperes_moluccense)),(((Calymperes_tahitense_320,Calymperes_tahitense_115),Calymperes_lonchophyllum),((Calymperes_afzelii_179,Calymperes_afzelii_165),Calymperes_graffeanum)))),Syrrhopodon_mauritianus)Calymperes),Syrrhopodon_japonicus),Syrrhopodon_gardneri)Calymperaceae,(Octoblepharum_Moorea_445,Octoblepharum_albidum)Octoblepharum);"^^xsd:string) in AnnotationAssertion(<http://example.org/TBD#asNewickString> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1> "(((((((((((Arthrocormus_schimperi,(Exostratum_blumii_243,Exostratum_blumii_245)Exostratum),(Exodictyon_incrassatum,((Leucophanes_seychellarum,(Leucophanes_octoblepharoides,Leucophanes_albescens),Leucophanes_glaucum),Syrrhopodon_confertus)Leucophanes))Albifolium,Syrrhopodon_muelleri),Syrrhopodon_perarmatus),((Syrrhopodon_ciliatus,(Syrrhopodon_albovaginatus_446,Syrrhopodon_albovaginatus_162)),(((Syrrhopodon_tortillis,Syrrhopodon_leprieurii),Syrrhopodon_prolifer),(Syrrhopodon_parasiticus,Syrrhopodon_trachyphyllus,(Syrrhopodon_banksii,Syrrhopodon_involutus)Leucophanella)))Trachymitrium),(Syrrhopodon_armatus,Syrrhopodon_fimbriatulus)),(((((Mitthyridium_obtusifolium,Mitthyridium_constrictum),Mitthyridium_fasciculatum),(Mitthyridium_undulatum,Mitthyridium_jungquilianum))Mitthyridium_as_per_paper,Syrrhopodon_mahensis)Mitthyridium,(Syrrhopodon_tristichus,(Syrrhopodon_croceus,Syrrhopodon_apertus,Syrrhopodon_fissipapillatus))))Syrrhopodon,((Syrrhopodon_incompletus,(((((Calymperes_palisotii_159,Calymperes_palisotii_180),Calymperes_motleyi),(Calymperes_erosum,Calymperes_robinsonii)),((Calymperes_tenerum,Calymperes_subintegrum,(Calymperes_tuatomuense,Calymperes_pseudopodianum),Calymperes_hispidium),Calymperes_moluccense)),(((Calymperes_tahitense_320,Calymperes_tahitense_115),Calymperes_lonchophyllum),((Calymperes_afzelii_179,Calymperes_afzelii_165),Calymperes_graffeanum)))),Syrrhopodon_mauritianus)Calymperes),Syrrhopodon_japonicus),Syrrhopodon_gardneri)Calymperaceae,(Octoblepharum_Moorea_445,Octoblepharum_albidum)Octoblepharum);"^^xsd:string)]
Use of undeclared class: <http://example.org/TBD#InternalSpecifier> [ClassAssertion(<http://example.org/TBD#InternalSpecifier> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref11_specifier1>) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Use of undeclared annotation property: <http://example.org/TBD#labeledNodeData> in annotation [Annotation(<http://example.org/TBD#labeledNodeData> _:genid213) in AnnotationAssertion(<http://example.org/TBD#labeledNodeData> _:genid207 _:genid213)]
Not enough property expressions; at least two needed [SubObjectPropertyOf(ObjectPropertyChain( <http://phyloinformatics.net/phyloref.owl#has_Sibling> ) <http://phyloinformatics.net/phyloref.owl#excludes_lineage_to>) in OntologyID(OntologyIRI(<http://phyloinformatics.net/phyloref.owl>) VersionIRI(<null>))]
Cannot pun between properties: <http://phylotastic.org/terms/tnrs.rdf#submittedName> [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref10_specifier1> ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Exodictyon incrassatum"^^xsd:string)) ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#submittedName> "Exodictyon incrassatum (Mitt.) Cardot"^^xsd:string))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Use of undeclared annotation property: <http://example.org/TBD#labeledNodeData> in annotation [Annotation(<http://example.org/TBD#labeledNodeData> _:genid267) in AnnotationAssertion(<http://example.org/TBD#labeledNodeData> _:genid207 _:genid267)]
Not enough operands; at least two needed: ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Exostratum blumii"^^xsd:string))) [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref8_specifier2> ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Exostratum blumii"^^xsd:string))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Use of undeclared class: <http://example.org/TBD#InternalSpecifier> [ClassAssertion(<http://example.org/TBD#InternalSpecifier> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref2_specifier1>) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Use of undeclared annotation property: <http://example.org/TBD#manchesterSyntax> in annotation [Annotation(<http://example.org/TBD#manchesterSyntax> "Node and ((Node that tnrs:matchedName value \"Syrrhopodon ciliatus\"^^xsd:string) or has_Descendant some (Node that tnrs:matchedName value \"Syrrhopodon ciliatus\"^^xsd:string) and (Node that tnrs:matchedName value \"Syrrhopodon involutus\"^^xsd:string) or has_Descendant some (Node that tnrs:matchedName value \"Syrrhopodon involutus\"^^xsd:string) and (has_Sibling some ((Node that tnrs:matchedName value \"Syrrhopodon perarmatus\"^^xsd:string) or has_Descendant some (Node that tnrs:matchedName value \"Syrrhopodon perarmatus\"^^xsd:string))))"^^xsd:string) in AnnotationAssertion(<http://example.org/TBD#manchesterSyntax> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref5> "Node and ((Node that tnrs:matchedName value \"Syrrhopodon ciliatus\"^^xsd:string) or has_Descendant some (Node that tnrs:matchedName value \"Syrrhopodon ciliatus\"^^xsd:string) and (Node that tnrs:matchedName value \"Syrrhopodon involutus\"^^xsd:string) or has_Descendant some (Node that tnrs:matchedName value \"Syrrhopodon involutus\"^^xsd:string) and (has_Sibling some ((Node that tnrs:matchedName value \"Syrrhopodon perarmatus\"^^xsd:string) or has_Descendant some (Node that tnrs:matchedName value \"Syrrhopodon perarmatus\"^^xsd:string))))"^^xsd:string)]
Use of undeclared annotation property: <http://purl.org/opentree/nexson#studyPublicationReference> in annotation [Annotation(<http://purl.org/opentree/nexson#studyPublicationReference> "Fisher KM, Wall DP, Yip KL, Mishler BD (2007) The Bryologist 110(1):46-73."^^xsd:string) in null]
Use of undeclared annotation property: <http://example.org/TBD#labeledNodeData> in annotation [Annotation(<http://example.org/TBD#labeledNodeData> _:genid211) in AnnotationAssertion(<http://example.org/TBD#labeledNodeData> _:genid207 _:genid211)]
Use of undeclared annotation property: <http://example.org/TBD#phylorefs> in annotation [Annotation(<http://example.org/TBD#phylorefs> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref9>) in AnnotationAssertion(<http://example.org/TBD#phylorefs> _:genid207 <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref9>)]
Use of undeclared class: <http://example.org/TBD#ExternalSpecifier> [ClassAssertion(<http://example.org/TBD#ExternalSpecifier> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref2_specifier3>) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Use of undeclared annotation property: <http://example.org/TBD#manchesterSyntax> in annotation [Annotation(<http://example.org/TBD#manchesterSyntax> "Node and ((Node that tnrs:matchedName value \"Mitthyridium fasciculatum\"^^xsd:string) or has_Descendant some (Node that tnrs:matchedName value \"Mitthyridium fasciculatum\"^^xsd:string) and (Node that tnrs:matchedName value \"Mitthyridium undulatum\"^^xsd:string) or has_Descendant some (Node that tnrs:matchedName value \"Mitthyridium undulatum\"^^xsd:string) and (has_Sibling some ((Node that tnrs:matchedName value \"Syrrhopodon croceus\"^^xsd:string) or has_Descendant some (Node that tnrs:matchedName value \"Syrrhopodon croceus\"^^xsd:string))))"^^xsd:string) in AnnotationAssertion(<http://example.org/TBD#manchesterSyntax> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref4> "Node and ((Node that tnrs:matchedName value \"Mitthyridium fasciculatum\"^^xsd:string) or has_Descendant some (Node that tnrs:matchedName value \"Mitthyridium fasciculatum\"^^xsd:string) and (Node that tnrs:matchedName value \"Mitthyridium undulatum\"^^xsd:string) or has_Descendant some (Node that tnrs:matchedName value \"Mitthyridium undulatum\"^^xsd:string) and (has_Sibling some ((Node that tnrs:matchedName value \"Syrrhopodon croceus\"^^xsd:string) or has_Descendant some (Node that tnrs:matchedName value \"Syrrhopodon croceus\"^^xsd:string))))"^^xsd:string)]
Use of undeclared class: <http://example.org/TBD#InternalSpecifier> [ClassAssertion(<http://example.org/TBD#InternalSpecifier> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref6_specifier2>) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Not enough operands; at least two needed: ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Syrrhopodon mauritianus"^^xsd:string))) [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref3_specifier3> ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Syrrhopodon mauritianus"^^xsd:string))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Not enough operands; at least two needed: ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Calymperes lonchophyllum"^^xsd:string))) [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref2_specifier1> ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Calymperes lonchophyllum"^^xsd:string))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Not enough operands; at least two needed: ObjectUnionOf(ObjectUnionOf(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref1_specifier3> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/CDAO_0000174> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref1_specifier3>))) [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref1> ObjectIntersectionOf(ObjectUnionOf(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref1_specifier1> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/CDAO_0000174> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref1_specifier1>)) ObjectUnionOf(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref1_specifier2> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/CDAO_0000174> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref1_specifier2>)) ObjectSomeValuesFrom(<http://phyloinformatics.net/phyloref.owl#has_Sibling> ObjectUnionOf(ObjectUnionOf(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref1_specifier3> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/CDAO_0000174> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref1_specifier3>))))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Use of undeclared annotation property: <http://phylotastic.org/terms/tnrs.rdf#matchedName> in annotation [Annotation(<http://phylotastic.org/terms/tnrs.rdf#matchedName> <http://phylotastic.org/terms/tnrs.rdf#matchedName>) in null]
Not enough operands; at least two needed: ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Leucophanes octoblepharoides"^^xsd:string))) [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref3_specifier2> ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Leucophanes octoblepharoides"^^xsd:string))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Use of undeclared annotation property: <http://example.org/TBD#labeledNodeData> in annotation [Annotation(<http://example.org/TBD#labeledNodeData> _:genid208) in AnnotationAssertion(<http://example.org/TBD#labeledNodeData> _:genid207 _:genid208)]
Use of undeclared class: <http://example.org/TBD#InternalSpecifier> [ClassAssertion(<http://example.org/TBD#InternalSpecifier> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref8_specifier1>) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Cannot pun between properties: <http://phylotastic.org/terms/tnrs.rdf#matchedName> [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref10_specifier1> ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Exodictyon incrassatum"^^xsd:string)) ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#submittedName> "Exodictyon incrassatum (Mitt.) Cardot"^^xsd:string))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Use of undeclared annotation property: <http://example.org/TBD#labeledNodeData> in annotation [Annotation(<http://example.org/TBD#labeledNodeData> _:genid210) in AnnotationAssertion(<http://example.org/TBD#labeledNodeData> _:genid207 _:genid210)]
Use of undeclared annotation property: <http://example.org/TBD#phylorefs> in annotation [Annotation(<http://example.org/TBD#phylorefs> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref3>) in AnnotationAssertion(<http://example.org/TBD#phylorefs> _:genid207 <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref3>)]
Cannot pun between properties: <http://phylotastic.org/terms/tnrs.rdf#matchedName> [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref1_specifier2> ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Leucophanes octoblepharoides"^^xsd:string))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Not enough operands; at least two needed: ObjectUnionOf(ObjectUnionOf(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref4_specifier3> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/CDAO_0000174> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref4_specifier3>))) [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref4> ObjectIntersectionOf(ObjectUnionOf(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref4_specifier1> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/CDAO_0000174> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref4_specifier1>)) ObjectUnionOf(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref4_specifier2> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/CDAO_0000174> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref4_specifier2>)) ObjectSomeValuesFrom(<http://phyloinformatics.net/phyloref.owl#has_Sibling> ObjectUnionOf(ObjectUnionOf(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref4_specifier3> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/CDAO_0000174> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref4_specifier3>))))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Not enough operands; at least two needed: ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Syrrhopodon croceus"^^xsd:string))) [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref2_specifier3> ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Syrrhopodon croceus"^^xsd:string))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Use of undeclared annotation property: <http://purl.org/dc/terms/contributor> in annotation [Annotation(<http://purl.org/dc/terms/contributor> "Nikki Rogers"^^xsd:string) in null]
Use of non-simple property in a restriction: ObjectMinCardinality(1 <http://purl.obolibrary.org/obo/CDAO_0000194> <http://purl.obolibrary.org/obo/CDAO_0000012>) [SubClassOf(<http://purl.obolibrary.org/obo/CDAO_0000026> ObjectMinCardinality(1 <http://purl.obolibrary.org/obo/CDAO_0000194> <http://purl.obolibrary.org/obo/CDAO_0000012>)) in OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/cdao.owl>) VersionIRI(<http://purl.obolibrary.org/obo/cdao/2013-02-01/cdao.owl>))]
Use of undeclared annotation property: <http://example.org/TBD#labeledNodeData> in annotation [Annotation(<http://example.org/TBD#labeledNodeData> _:genid246) in AnnotationAssertion(<http://example.org/TBD#labeledNodeData> _:genid207 _:genid246)]
Use of undeclared annotation property: <http://example.org/TBD#labeledNodeData> in annotation [Annotation(<http://example.org/TBD#labeledNodeData> _:genid219) in AnnotationAssertion(<http://example.org/TBD#labeledNodeData> _:genid207 _:genid219)]
Use of undeclared annotation property: <http://purl.org/dc/terms/description> in annotation [Annotation(<http://purl.org/dc/terms/description> "An RDF vocabulary for describing the basic structure and content of concept schemes such as thesauri, classification schemes, subject heading lists, taxonomies, 'folksonomies', other types of controlled vocabulary, and also concept schemes embedded in glossaries and terminologies."@en) in null]
Use of undeclared annotation property: <http://example.org/TBD#phylorefs> in annotation [Annotation(<http://example.org/TBD#phylorefs> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref6>) in AnnotationAssertion(<http://example.org/TBD#phylorefs> _:genid207 <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref6>)]
Use of undeclared annotation property: <http://example.org/TBD#phylogenies> in annotation [Annotation(<http://example.org/TBD#phylogenies> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1>) in AnnotationAssertion(<http://example.org/TBD#phylogenies> _:genid207 <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1>)]
Use of undeclared annotation property: <http://example.org/TBD#labeledNodeData> in annotation [Annotation(<http://example.org/TBD#labeledNodeData> _:genid263) in AnnotationAssertion(<http://example.org/TBD#labeledNodeData> _:genid207 _:genid263)]
Use of undeclared class: <http://example.org/TBD#ExternalSpecifier> [ClassAssertion(<http://example.org/TBD#ExternalSpecifier> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref10_specifier2>) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Use of undeclared class: <http://example.org/TBD#InternalSpecifier> [ClassAssertion(<http://example.org/TBD#InternalSpecifier> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref9_specifier1>) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Use of undeclared annotation property: <http://example.org/TBD#labeledNodeData> in annotation [Annotation(<http://example.org/TBD#labeledNodeData> _:genid239) in AnnotationAssertion(<http://example.org/TBD#labeledNodeData> _:genid207 _:genid239)]
Not enough operands; at least two needed: ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Exodictyon incrassatum"^^xsd:string))) [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref11_specifier3> ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Exodictyon incrassatum"^^xsd:string))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Cannot pun between properties: <http://phylotastic.org/terms/tnrs.rdf#matchedName> [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref4_specifier3> ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Syrrhopodon croceus"^^xsd:string))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Not enough operands; at least two needed: ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Syrrhopodon muelleri"^^xsd:string))) [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref7_specifier3> ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Syrrhopodon muelleri"^^xsd:string))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Use of undeclared annotation property: <http://example.org/TBD#labeledNodeData> in annotation [Annotation(<http://example.org/TBD#labeledNodeData> _:genid269) in AnnotationAssertion(<http://example.org/TBD#labeledNodeData> _:genid207 _:genid269)]
Use of undeclared annotation property: <http://purl.org/opentree/nexson#comment> in annotation [Annotation(<http://purl.org/opentree/nexson#comment> "None."^^xsd:string) in null]
Not enough operands; at least two needed: ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Syrrhopodon involutus"^^xsd:string))) [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref5_specifier2> ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Syrrhopodon involutus"^^xsd:string))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Use of undeclared class: <http://example.org/TBD#InternalSpecifier> [ClassAssertion(<http://example.org/TBD#InternalSpecifier> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref5_specifier2>) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Use of undeclared annotation property: <http://example.org/TBD#labeledNodeData> in annotation [Annotation(<http://example.org/TBD#labeledNodeData> _:genid233) in AnnotationAssertion(<http://example.org/TBD#labeledNodeData> _:genid207 _:genid233)]
Use of undeclared annotation property: <http://example.org/TBD#manchesterSyntax> in annotation [Annotation(<http://example.org/TBD#manchesterSyntax> "Node and ((Node that tnrs:matchedName value \"Exostratum blumii\"^^xsd:string) or has_Descendant some (Node that tnrs:matchedName value \"Exostratum blumii\"^^xsd:string) and  and (has_Sibling some ((Node that tnrs:matchedName value \"Arthrocormus schimperi\"^^xsd:string) or has_Descendant some (Node that tnrs:matchedName value \"Arthrocormus schimperi\"^^xsd:string))))"^^xsd:string) in AnnotationAssertion(<http://example.org/TBD#manchesterSyntax> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref9> "Node and ((Node that tnrs:matchedName value \"Exostratum blumii\"^^xsd:string) or has_Descendant some (Node that tnrs:matchedName value \"Exostratum blumii\"^^xsd:string) and  and (has_Sibling some ((Node that tnrs:matchedName value \"Arthrocormus schimperi\"^^xsd:string) or has_Descendant some (Node that tnrs:matchedName value \"Arthrocormus schimperi\"^^xsd:string))))"^^xsd:string)]
Cannot pun between properties: <http://phylotastic.org/terms/tnrs.rdf#matchedName> [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref9_specifier1> ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Exostratum blumii"^^xsd:string))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Cannot pun between properties: <http://phylotastic.org/terms/tnrs.rdf#matchedName> [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref4_specifier1> ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Mitthyridium fasciculatum"^^xsd:string))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Not enough operands; at least two needed: ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Arthrocormus schimperi"^^xsd:string))) [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref9_specifier3> ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Arthrocormus schimperi"^^xsd:string))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Not enough operands; at least two needed: ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Syrrhopodon banksii"^^xsd:string))) [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref6_specifier1> ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Syrrhopodon banksii"^^xsd:string))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Use of undeclared annotation property: <http://example.org/TBD#labeledNodeData> in annotation [Annotation(<http://example.org/TBD#labeledNodeData> _:genid268) in AnnotationAssertion(<http://example.org/TBD#labeledNodeData> _:genid207 _:genid268)]
Not enough operands; at least two needed: ObjectUnionOf(ObjectUnionOf(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref11_specifier3> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/CDAO_0000174> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref11_specifier3>))) [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref11> ObjectIntersectionOf(ObjectUnionOf(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref11_specifier1> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/CDAO_0000174> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref11_specifier1>)) ObjectUnionOf(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref11_specifier2> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/CDAO_0000174> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref11_specifier2>)) ObjectSomeValuesFrom(<http://phyloinformatics.net/phyloref.owl#has_Sibling> ObjectUnionOf(ObjectUnionOf(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref11_specifier3> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/CDAO_0000174> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref11_specifier3>))))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Use of undeclared annotation property: <http://example.org/TBD#labeledNodeData> in annotation [Annotation(<http://example.org/TBD#labeledNodeData> _:genid266) in AnnotationAssertion(<http://example.org/TBD#labeledNodeData> _:genid207 _:genid266)]
Cannot pun between properties: <http://phylotastic.org/terms/tnrs.rdf#matchedName> [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref8_specifier2> ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Exostratum blumii"^^xsd:string))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Use of undeclared annotation property: <http://example.org/TBD#phylogenies> in annotation [Annotation(<http://example.org/TBD#phylogenies> _:genid207) in null]
Use of undeclared annotation property: <http://example.org/TBD#labeledNodeData> in annotation [Annotation(<http://example.org/TBD#labeledNodeData> _:genid242) in AnnotationAssertion(<http://example.org/TBD#labeledNodeData> _:genid207 _:genid242)]
Use of undeclared annotation property: <http://example.org/TBD#labeledNodeData> in annotation [Annotation(<http://example.org/TBD#labeledNodeData> _:genid209) in AnnotationAssertion(<http://example.org/TBD#labeledNodeData> _:genid207 _:genid209)]
Use of undeclared annotation property: <http://example.org/TBD#labeledNodeData> in annotation [Annotation(<http://example.org/TBD#labeledNodeData> _:genid255) in AnnotationAssertion(<http://example.org/TBD#labeledNodeData> _:genid207 _:genid255)]
Use of undeclared annotation property: <http://purl.org/opentree/nexson#studyYear> in annotation [Annotation(<http://purl.org/opentree/nexson#studyYear> "2007"^^xsd:integer) in null]
Not enough operands; at least two needed: ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Syrrhopodon gardneri"^^xsd:string))) [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref1_specifier1> ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Syrrhopodon gardneri"^^xsd:string))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Use of undeclared annotation property: <http://example.org/TBD#labeledNodeData> in annotation [Annotation(<http://example.org/TBD#labeledNodeData> _:genid232) in AnnotationAssertion(<http://example.org/TBD#labeledNodeData> _:genid207 _:genid232)]
Use of undeclared annotation property: <http://example.org/TBD#labeledNodeData> in annotation [Annotation(<http://example.org/TBD#labeledNodeData> _:genid258) in AnnotationAssertion(<http://example.org/TBD#labeledNodeData> _:genid207 _:genid258)]
Use of undeclared class: <http://example.org/TBD#ExternalSpecifier> [ClassAssertion(<http://example.org/TBD#ExternalSpecifier> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref7_specifier3>) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Use of undeclared class: <http://example.org/TBD#ExternalSpecifier> [ClassAssertion(<http://example.org/TBD#ExternalSpecifier> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref1_specifier3>) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Use of undeclared annotation property: <http://example.org/TBD#labeledNodeData> in annotation [Annotation(<http://example.org/TBD#labeledNodeData> _:genid224) in AnnotationAssertion(<http://example.org/TBD#labeledNodeData> _:genid207 _:genid224)]
Use of undeclared annotation property: <http://example.org/TBD#labeledNodeData> in annotation [Annotation(<http://example.org/TBD#labeledNodeData> _:genid254) in AnnotationAssertion(<http://example.org/TBD#labeledNodeData> _:genid207 _:genid254)]
Use of undeclared annotation property: <http://example.org/TBD#labeledNodeData> in annotation [Annotation(<http://example.org/TBD#labeledNodeData> _:genid260) in AnnotationAssertion(<http://example.org/TBD#labeledNodeData> _:genid207 _:genid260)]
Use of undeclared class: <http://example.org/TBD#InternalSpecifier> [ClassAssertion(<http://example.org/TBD#InternalSpecifier> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref1_specifier2>) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Use of undeclared class: <http://example.org/TBD#InternalSpecifier> [ClassAssertion(<http://example.org/TBD#InternalSpecifier> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref1_specifier1>) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Cannot pun between properties: <http://phylotastic.org/terms/tnrs.rdf#matchedName> [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref2_specifier3> ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Syrrhopodon croceus"^^xsd:string))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Use of undeclared class: <http://example.org/TBD#ExternalSpecifier> [ClassAssertion(<http://example.org/TBD#ExternalSpecifier> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref3_specifier3>) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Use of undeclared annotation property: <http://example.org/TBD#phylorefs> in annotation [Annotation(<http://example.org/TBD#phylorefs> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref2>) in AnnotationAssertion(<http://example.org/TBD#phylorefs> _:genid207 <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref2>)]
Not enough operands; at least two needed: ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Syrrhopodon perarmatus"^^xsd:string))) [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref5_specifier3> ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Syrrhopodon perarmatus"^^xsd:string))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Not enough operands; at least two needed: ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Leucophanes octoblepharoides"^^xsd:string))) [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref1_specifier2> ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Leucophanes octoblepharoides"^^xsd:string))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Use of undeclared annotation property: <http://purl.org/dc/elements/1.1/license> in annotation [Annotation(<http://purl.org/dc/elements/1.1/license> "http://creativecommons.org/licenses/by/4.0/"^^xsd:string) in null]
Not enough operands; at least two needed: ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Syrrhopodon ciliatus"^^xsd:string))) [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref5_specifier1> ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Syrrhopodon ciliatus"^^xsd:string))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Use of undeclared annotation property: <http://example.org/TBD#manchesterSyntax> in annotation [Annotation(<http://example.org/TBD#manchesterSyntax> "Node and ((Node that tnrs:matchedName value \"Calymperes lonchophyllum\"^^xsd:string) or has_Descendant some (Node that tnrs:matchedName value \"Calymperes lonchophyllum\"^^xsd:string) and (Node that tnrs:matchedName value \"Syrrhopodon mauritianus\"^^xsd:string) or has_Descendant some (Node that tnrs:matchedName value \"Syrrhopodon mauritianus\"^^xsd:string) and (has_Sibling some ((Node that tnrs:matchedName value \"Syrrhopodon croceus\"^^xsd:string) or has_Descendant some (Node that tnrs:matchedName value \"Syrrhopodon croceus\"^^xsd:string))))"^^xsd:string) in AnnotationAssertion(<http://example.org/TBD#manchesterSyntax> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref2> "Node and ((Node that tnrs:matchedName value \"Calymperes lonchophyllum\"^^xsd:string) or has_Descendant some (Node that tnrs:matchedName value \"Calymperes lonchophyllum\"^^xsd:string) and (Node that tnrs:matchedName value \"Syrrhopodon mauritianus\"^^xsd:string) or has_Descendant some (Node that tnrs:matchedName value \"Syrrhopodon mauritianus\"^^xsd:string) and (has_Sibling some ((Node that tnrs:matchedName value \"Syrrhopodon croceus\"^^xsd:string) or has_Descendant some (Node that tnrs:matchedName value \"Syrrhopodon croceus\"^^xsd:string))))"^^xsd:string)]
Cannot pun between properties: <http://phylotastic.org/terms/tnrs.rdf#matchedName> [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref7_specifier2> ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Leucophanes octoblepharoides"^^xsd:string))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Cannot pun between properties: <http://phylotastic.org/terms/tnrs.rdf#matchedName> [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref11_specifier3> ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Exodictyon incrassatum"^^xsd:string))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Use of undeclared annotation property: <http://example.org/TBD#labeledNodeData> in annotation [Annotation(<http://example.org/TBD#labeledNodeData> _:genid248) in AnnotationAssertion(<http://example.org/TBD#labeledNodeData> _:genid207 _:genid248)]
Not enough operands; at least two needed: ObjectUnionOf(ObjectUnionOf(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref5_specifier3> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/CDAO_0000174> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref5_specifier3>))) [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref5> ObjectIntersectionOf(ObjectUnionOf(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref5_specifier1> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/CDAO_0000174> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref5_specifier1>)) ObjectUnionOf(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref5_specifier2> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/CDAO_0000174> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref5_specifier2>)) ObjectSomeValuesFrom(<http://phyloinformatics.net/phyloref.owl#has_Sibling> ObjectUnionOf(ObjectUnionOf(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref5_specifier3> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/CDAO_0000174> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref5_specifier3>))))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Use of undeclared annotation property: <http://purl.org/dc/terms/contributor> in annotation [Annotation(<http://purl.org/dc/terms/contributor> "Participants in W3C's Semantic Web Deployment Working Group."^^xsd:string) in null]
Not enough operands; at least two needed: ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Exostratum blumii"^^xsd:string))) [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref9_specifier1> ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Exostratum blumii"^^xsd:string))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Cannot pun between properties: <http://phylotastic.org/terms/tnrs.rdf#matchedName> [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref5_specifier1> ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Syrrhopodon ciliatus"^^xsd:string))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Not enough operands; at least two needed: ObjectUnionOf(ObjectUnionOf(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref2_specifier3> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/CDAO_0000174> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref2_specifier3>))) [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref2> ObjectIntersectionOf(ObjectUnionOf(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref2_specifier1> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/CDAO_0000174> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref2_specifier1>)) ObjectUnionOf(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref2_specifier2> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/CDAO_0000174> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref2_specifier2>)) ObjectSomeValuesFrom(<http://phyloinformatics.net/phyloref.owl#has_Sibling> ObjectUnionOf(ObjectUnionOf(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref2_specifier3> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/CDAO_0000174> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref2_specifier3>))))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Use of undeclared annotation property: <http://example.org/TBD#manchesterSyntax> in annotation [Annotation(<http://example.org/TBD#manchesterSyntax> "Node and ((Node that tnrs:matchedName value \"Arthrocormus schimperi\"^^xsd:string) or has_Descendant some (Node that tnrs:matchedName value \"Arthrocormus schimperi\"^^xsd:string) and (has_Sibling some ((Node that tnrs:matchedName value \"Exostratum blumii\"^^xsd:string) or has_Descendant some (Node that tnrs:matchedName value \"Exostratum blumii\"^^xsd:string))))"^^xsd:string) in AnnotationAssertion(<http://example.org/TBD#manchesterSyntax> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref8> "Node and ((Node that tnrs:matchedName value \"Arthrocormus schimperi\"^^xsd:string) or has_Descendant some (Node that tnrs:matchedName value \"Arthrocormus schimperi\"^^xsd:string) and (has_Sibling some ((Node that tnrs:matchedName value \"Exostratum blumii\"^^xsd:string) or has_Descendant some (Node that tnrs:matchedName value \"Exostratum blumii\"^^xsd:string))))"^^xsd:string)]
Not enough operands; at least two needed: ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Leucophanes octoblepharoides"^^xsd:string))) [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref7_specifier2> ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Leucophanes octoblepharoides"^^xsd:string))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Use of undeclared annotation property: <http://purl.org/opentree/nexson#curatorName> in annotation [Annotation(<http://purl.org/opentree/nexson#curatorName> "Gaurav Vaidya <gaurav@ggvaidya.com>"^^xsd:string) in null]
Not enough operands; at least two needed: ObjectUnionOf(ObjectUnionOf(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref10_specifier2> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/CDAO_0000174> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref10_specifier2>))) [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref10> ObjectIntersectionOf(ObjectUnionOf(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref10_specifier1> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/CDAO_0000174> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref10_specifier1>)) ObjectSomeValuesFrom(<http://phyloinformatics.net/phyloref.owl#has_Sibling> ObjectUnionOf(ObjectUnionOf(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref10_specifier2> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/CDAO_0000174> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref10_specifier2>))))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Cannot pun between properties: <http://phylotastic.org/terms/tnrs.rdf#matchedName> [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref3_specifier2> ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Leucophanes octoblepharoides"^^xsd:string))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Use of undeclared annotation property: <http://example.org/TBD#labeledNodeData> in annotation [Annotation(<http://example.org/TBD#labeledNodeData> _:genid253) in AnnotationAssertion(<http://example.org/TBD#labeledNodeData> _:genid207 _:genid253)]
Use of undeclared annotation property: <http://example.org/TBD#labeledNodeData> in annotation [Annotation(<http://example.org/TBD#labeledNodeData> _:genid250) in AnnotationAssertion(<http://example.org/TBD#labeledNodeData> _:genid207 _:genid250)]
Use of undeclared annotation property: <http://example.org/TBD#labeledNodeData> in annotation [Annotation(<http://example.org/TBD#labeledNodeData> _:genid225) in AnnotationAssertion(<http://example.org/TBD#labeledNodeData> _:genid207 _:genid225)]
Use of undeclared annotation property: <http://example.org/TBD#labeledNodeData> in annotation [Annotation(<http://example.org/TBD#labeledNodeData> _:genid227) in AnnotationAssertion(<http://example.org/TBD#labeledNodeData> _:genid207 _:genid227)]
Use of undeclared annotation property: <http://example.org/TBD#labeledNodeData> in annotation [Annotation(<http://example.org/TBD#labeledNodeData> _:genid229) in AnnotationAssertion(<http://example.org/TBD#labeledNodeData> _:genid207 _:genid229)]
Use of undeclared annotation property: <http://example.org/TBD#manchesterSyntax> in annotation [Annotation(<http://example.org/TBD#manchesterSyntax> "Node and ((Node that tnrs:matchedName value \"Syrrhopodon croceus\"^^xsd:string) or has_Descendant some (Node that tnrs:matchedName value \"Syrrhopodon croceus\"^^xsd:string) and (Node that tnrs:matchedName value \"Leucophanes octoblepharoides\"^^xsd:string) or has_Descendant some (Node that tnrs:matchedName value \"Leucophanes octoblepharoides\"^^xsd:string) and (has_Sibling some ((Node that tnrs:matchedName value \"Syrrhopodon mauritianus\"^^xsd:string) or has_Descendant some (Node that tnrs:matchedName value \"Syrrhopodon mauritianus\"^^xsd:string))))"^^xsd:string) in AnnotationAssertion(<http://example.org/TBD#manchesterSyntax> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref3> "Node and ((Node that tnrs:matchedName value \"Syrrhopodon croceus\"^^xsd:string) or has_Descendant some (Node that tnrs:matchedName value \"Syrrhopodon croceus\"^^xsd:string) and (Node that tnrs:matchedName value \"Leucophanes octoblepharoides\"^^xsd:string) or has_Descendant some (Node that tnrs:matchedName value \"Leucophanes octoblepharoides\"^^xsd:string) and (has_Sibling some ((Node that tnrs:matchedName value \"Syrrhopodon mauritianus\"^^xsd:string) or has_Descendant some (Node that tnrs:matchedName value \"Syrrhopodon mauritianus\"^^xsd:string))))"^^xsd:string)]
Use of undeclared annotation property: <http://example.org/TBD#labeledNodeData> in annotation [Annotation(<http://example.org/TBD#labeledNodeData> _:genid220) in AnnotationAssertion(<http://example.org/TBD#labeledNodeData> _:genid207 _:genid220)]
Use of undeclared annotation property: <http://purl.org/dc/terms/contributor> in annotation [Annotation(<http://purl.org/dc/terms/contributor> "Dave Beckett"^^xsd:string) in null]
Use of undeclared class: <http://example.org/TBD#InternalSpecifier> [ClassAssertion(<http://example.org/TBD#InternalSpecifier> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref7_specifier2>) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Not enough operands; at least two needed: ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Octoblepharum albidum"^^xsd:string))) [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref1_specifier3> ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Octoblepharum albidum"^^xsd:string))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Use of undeclared annotation property: <http://example.org/TBD#phylorefs> in annotation [Annotation(<http://example.org/TBD#phylorefs> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref8>) in AnnotationAssertion(<http://example.org/TBD#phylorefs> _:genid207 <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref8>)]
Not enough operands; at least two needed: ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Arthrocormus schimperi"^^xsd:string))) [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref8_specifier1> ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Arthrocormus schimperi"^^xsd:string))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Cannot pun between properties: <http://phylotastic.org/terms/tnrs.rdf#matchedName> [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref6_specifier4> ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Syrrhopodon trachyphyllus"^^xsd:string))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Use of undeclared annotation property: <http://example.org/TBD#labeledNodeData> in annotation [Annotation(<http://example.org/TBD#labeledNodeData> _:genid234) in AnnotationAssertion(<http://example.org/TBD#labeledNodeData> _:genid207 _:genid234)]
Not enough operands; at least two needed: ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> ObjectHasValue(<http://www.w3.org/2004/02/skos/core#closeMatch> <http://www.tropicos.org/Name/35179022>))) [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref7_specifier1> ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> ObjectHasValue(<http://www.w3.org/2004/02/skos/core#closeMatch> <http://www.tropicos.org/Name/35179022>))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Use of undeclared annotation property: <http://example.org/TBD#phylorefs> in annotation [Annotation(<http://example.org/TBD#phylorefs> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref4>) in AnnotationAssertion(<http://example.org/TBD#phylorefs> _:genid207 <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref4>)]
Use of undeclared class: <http://example.org/TBD#InternalSpecifier> [ClassAssertion(<http://example.org/TBD#InternalSpecifier> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref10_specifier1>) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Use of undeclared annotation property: <http://example.org/TBD#labeledNodeData> in annotation [Annotation(<http://example.org/TBD#labeledNodeData> _:genid265) in AnnotationAssertion(<http://example.org/TBD#labeledNodeData> _:genid207 _:genid265)]
Cannot pun between properties: <http://phylotastic.org/terms/tnrs.rdf#matchedName> [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref8_specifier1> ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Arthrocormus schimperi"^^xsd:string))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Cannot pun between properties: <http://phylotastic.org/terms/tnrs.rdf#matchedName> [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref3_specifier1> ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Syrrhopodon croceus"^^xsd:string))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Cannot pun between properties: <http://phylotastic.org/terms/tnrs.rdf#matchedName> [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref6_specifier2> ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Syrrhopodon involutus"^^xsd:string))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Not enough operands; at least two needed: ObjectUnionOf(ObjectUnionOf(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref3_specifier3> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/CDAO_0000174> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref3_specifier3>))) [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref3> ObjectIntersectionOf(ObjectUnionOf(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref3_specifier1> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/CDAO_0000174> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref3_specifier1>)) ObjectUnionOf(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref3_specifier2> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/CDAO_0000174> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref3_specifier2>)) ObjectSomeValuesFrom(<http://phyloinformatics.net/phyloref.owl#has_Sibling> ObjectUnionOf(ObjectUnionOf(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref3_specifier3> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/CDAO_0000174> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref3_specifier3>))))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Use of undeclared annotation property: <http://example.org/TBD#labeledNodeData> in annotation [Annotation(<http://example.org/TBD#labeledNodeData> _:genid230) in AnnotationAssertion(<http://example.org/TBD#labeledNodeData> _:genid207 _:genid230)]
Use of undeclared class: <http://example.org/TBD#InternalSpecifier> [ClassAssertion(<http://example.org/TBD#InternalSpecifier> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref6_specifier1>) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Use of reserved vocabulary for class IRI: rdf:List [ObjectPropertyRange(<http://www.w3.org/2004/02/skos/core#memberList> rdf:List) in OntologyID(OntologyIRI(<http://www.w3.org/2004/02/skos/core>) VersionIRI(<null>))]
Use of undeclared annotation property: <http://example.org/TBD#labeledNodeData> in annotation [Annotation(<http://example.org/TBD#labeledNodeData> _:genid212) in AnnotationAssertion(<http://example.org/TBD#labeledNodeData> _:genid207 _:genid212)]
Use of undeclared annotation property: <http://example.org/TBD#labeledNodeData> in annotation [Annotation(<http://example.org/TBD#labeledNodeData> _:genid252) in AnnotationAssertion(<http://example.org/TBD#labeledNodeData> _:genid207 _:genid252)]
Not enough operands; at least two needed: ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Syrrhopodon trachyphyllus"^^xsd:string))) [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref6_specifier4> ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Syrrhopodon trachyphyllus"^^xsd:string))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Use of undeclared annotation property: <http://example.org/TBD#manchesterSyntax> in annotation [Annotation(<http://example.org/TBD#manchesterSyntax> "Node and ((Node that skos:closeMatch value \"{'@id': 'http://www.tropicos.org/Name/35179022'}\"^^xsd:string) or has_Descendant some (Node that skos:closeMatch value \"{'@id': 'http://www.tropicos.org/Name/35179022'}\"^^xsd:string) and (Node that tnrs:matchedName value \"Leucophanes octoblepharoides\"^^xsd:string) or has_Descendant some (Node that tnrs:matchedName value \"Leucophanes octoblepharoides\"^^xsd:string) and (has_Sibling some ((Node that tnrs:matchedName value \"Syrrhopodon muelleri\"^^xsd:string) or has_Descendant some (Node that tnrs:matchedName value \"Syrrhopodon muelleri\"^^xsd:string))))"^^xsd:string) in AnnotationAssertion(<http://example.org/TBD#manchesterSyntax> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref7> "Node and ((Node that skos:closeMatch value \"{'@id': 'http://www.tropicos.org/Name/35179022'}\"^^xsd:string) or has_Descendant some (Node that skos:closeMatch value \"{'@id': 'http://www.tropicos.org/Name/35179022'}\"^^xsd:string) and (Node that tnrs:matchedName value \"Leucophanes octoblepharoides\"^^xsd:string) or has_Descendant some (Node that tnrs:matchedName value \"Leucophanes octoblepharoides\"^^xsd:string) and (has_Sibling some ((Node that tnrs:matchedName value \"Syrrhopodon muelleri\"^^xsd:string) or has_Descendant some (Node that tnrs:matchedName value \"Syrrhopodon muelleri\"^^xsd:string))))"^^xsd:string)]
Use of undeclared annotation property: <http://example.org/TBD#labeledNodeData> in annotation [Annotation(<http://example.org/TBD#labeledNodeData> _:genid245) in AnnotationAssertion(<http://example.org/TBD#labeledNodeData> _:genid207 _:genid245)]
Cannot pun between properties: <http://phylotastic.org/terms/tnrs.rdf#matchedName> [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref5_specifier3> ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Syrrhopodon perarmatus"^^xsd:string))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Cannot pun between properties: <http://phylotastic.org/terms/tnrs.rdf#matchedName> [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref2_specifier1> ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Calymperes lonchophyllum"^^xsd:string))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Use of undeclared annotation property: <http://example.org/TBD#phylorefs> in annotation [Annotation(<http://example.org/TBD#phylorefs> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref5>) in AnnotationAssertion(<http://example.org/TBD#phylorefs> _:genid207 <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref5>)]
Use of undeclared class: <http://example.org/TBD#ExternalSpecifier> [ClassAssertion(<http://example.org/TBD#ExternalSpecifier> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref11_specifier3>) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Use of undeclared annotation property: <http://phylotastic.org/terms/tnrs.rdf#submittedName> in annotation [Annotation(<http://phylotastic.org/terms/tnrs.rdf#submittedName> <http://phylotastic.org/terms/tnrs.rdf#submittedName>) in null]
Use of undeclared annotation property: <http://example.org/TBD#labeledNodeData> in annotation [Annotation(<http://example.org/TBD#labeledNodeData> _:genid236) in AnnotationAssertion(<http://example.org/TBD#labeledNodeData> _:genid207 _:genid236)]
Not enough operands; at least two needed: ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Syrrhopodon involutus"^^xsd:string))) [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref6_specifier2> ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Syrrhopodon involutus"^^xsd:string))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Use of undeclared annotation property: <http://example.org/TBD#labeledNodeData> in annotation [Annotation(<http://example.org/TBD#labeledNodeData> _:genid244) in AnnotationAssertion(<http://example.org/TBD#labeledNodeData> _:genid207 _:genid244)]
Use of undeclared annotation property: <http://example.org/TBD#labeledNodeData> in annotation [Annotation(<http://example.org/TBD#labeledNodeData> _:genid251) in AnnotationAssertion(<http://example.org/TBD#labeledNodeData> _:genid207 _:genid251)]
Not enough operands; at least two needed: ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Syrrhopodon mauritianus"^^xsd:string))) [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref2_specifier2> ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Syrrhopodon mauritianus"^^xsd:string))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Use of undeclared annotation property: <http://example.org/TBD#labeledNodeData> in annotation [Annotation(<http://example.org/TBD#labeledNodeData> _:genid241) in AnnotationAssertion(<http://example.org/TBD#labeledNodeData> _:genid207 _:genid241)]
Cannot pun between properties: <http://phylotastic.org/terms/tnrs.rdf#matchedName> [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref11_specifier1> ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Leucophanes octoblepharoides"^^xsd:string))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Not enough operands; at least two needed: ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Leucophanes seychellarum"^^xsd:string))) [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref11_specifier2> ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Leucophanes seychellarum"^^xsd:string))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Not enough operands; at least two needed: ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Leucophanes octoblepharoides"^^xsd:string))) [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref10_specifier2> ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Leucophanes octoblepharoides"^^xsd:string))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Use of undeclared annotation property: <http://example.org/TBD#labeledNodeData> in annotation [Annotation(<http://example.org/TBD#labeledNodeData> _:genid218) in AnnotationAssertion(<http://example.org/TBD#labeledNodeData> _:genid207 _:genid218)]
Use of undeclared class: <http://example.org/TBD#ExternalSpecifier> [ClassAssertion(<http://example.org/TBD#ExternalSpecifier> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref5_specifier3>) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Cannot pun between properties: <http://phylotastic.org/terms/tnrs.rdf#matchedName> [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref2_specifier2> ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Syrrhopodon mauritianus"^^xsd:string))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Cannot pun between properties: <http://phylotastic.org/terms/tnrs.rdf#matchedName> [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref3_specifier3> ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Syrrhopodon mauritianus"^^xsd:string))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Not enough operands; at least two needed: ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Syrrhopodon croceus"^^xsd:string))) [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref4_specifier3> ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Syrrhopodon croceus"^^xsd:string))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Not enough operands; at least two needed: ObjectUnionOf(ObjectUnionOf(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref8_specifier2> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/CDAO_0000174> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref8_specifier2>))) [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref8> ObjectIntersectionOf(ObjectUnionOf(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref8_specifier1> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/CDAO_0000174> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref8_specifier1>)) ObjectSomeValuesFrom(<http://phyloinformatics.net/phyloref.owl#has_Sibling> ObjectUnionOf(ObjectUnionOf(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref8_specifier2> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/CDAO_0000174> <https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref8_specifier2>))))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Use of undeclared annotation property: <http://example.org/TBD#labeledNodeData> in annotation [Annotation(<http://example.org/TBD#labeledNodeData> _:genid217) in AnnotationAssertion(<http://example.org/TBD#labeledNodeData> _:genid207 _:genid217)]
Use of undeclared annotation property: <http://example.org/TBD#labeledNodeData> in annotation [Annotation(<http://example.org/TBD#labeledNodeData> _:genid262) in AnnotationAssertion(<http://example.org/TBD#labeledNodeData> _:genid207 _:genid262)]
Cannot pun between properties: <http://phylotastic.org/terms/tnrs.rdf#matchedName> [EquivalentClasses(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#file1_tree1_phyloref10_specifier2> ObjectUnionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CDAO_0000140> DataHasValue(<http://phylotastic.org/terms/tnrs.rdf#matchedName> "Leucophanes octoblepharoides"^^xsd:string))) ) in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Cannot pun between properties: <http://phylotastic.org/terms/tnrs.rdf#submittedName> [null in OntologyID(OntologyIRI(<https://doi.org/10.1639/0007-2745%282007%29110%5B46%3APOTCWA%5D2.0.CO%3B2#>) VersionIRI(<null>))]
Use of undeclared annotation property: <http://example.org/TBD#labeledNodeData> in annotation [Annotation(<http://example.org/TBD#labeledNodeData> _:genid243) in AnnotationAssertion(<http://example.org/TBD#labeledNodeData> _:genid207 _:genid243)]

@ignazio1977
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Uhm first diagnosis incorrect - I had the wrong branch checked out.

@ignazio1977
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The construct that is tripping up the reasoner is this one:

<!-- http://phyloinformatics.net/phyloref.owl#excludes_lineage_to -->


<owl:ObjectProperty rdf:about="http://phyloinformatics.net/phyloref.owl#excludes_lineage_to">
    <owl:propertyChainAxiom rdf:parseType="Collection">
        <rdf:Description rdf:about="http://phyloinformatics.net/phyloref.owl#has_Sibling"/>
    </owl:propertyChainAxiom>
    <owl:propertyChainAxiom rdf:parseType="Collection">
        <rdf:Description rdf:about="http://phyloinformatics.net/phyloref.owl#has_Sibling"/>
        <rdf:Description rdf:about="http://purl.obolibrary.org/obo/CDAO_0000174"/>
    </owl:propertyChainAxiom>
</owl:ObjectProperty>

The first chain is invalid. JFact should handle this invalid axiom more gracefully.

@ignazio1977 ignazio1977 changed the title "ReasonerInternalException: not enough elements in the n-ary element" Ignore invalid axioms: property chains with one property Oct 14, 2017
ignazio1977 added a commit that referenced this issue Oct 14, 2017
@ignazio1977
Fix Ignore invalid axioms: property chains with one property #19
4ebb509
ignazio1977 added a commit that referenced this issue Oct 14, 2017
@ignazio1977
Fix Ignore invalid axioms: property chains with one property #19
d1d72de
@ignazio1977
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Failure fixed in 4.0.5 and 5.0.3

@gaurav
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gaurav commented Oct 14, 2017

Thank you so much for your help in diagnosing my issue and improving error reporting!

@gaurav gaurav mentioned this issue Mar 16, 2018
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@gaurav gaurav mentioned this issue Mar 25, 2018
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