Protein acceleration

This GitHub repository contains the Python code for reproducing the analysis and figures in the protein acceleration publication (https://www.biorxiv.org/content/10.1101/658401v2), as well as pre-processing directions to harmonize source .bam and .loom files. The version of the protaccel package is equivalent to to https://pypi.org/project/protaccel/0.301/ and https://zenodo.org/record/3620874. A Google Colaboratory notebook hosted at https://colab.research.google.com/drive/1UhemkpBT5YtgN9kjuzIKY7uGbl9-phwX allows the immediate reproduction of the CITE-seq processing in the cloud. Available under the BSD-2-Clause license.

Name		Name	Last commit message	Last commit date
Latest commit History 17 Commits
CITE-seq Colaboratory notebook		CITE-seq Colaboratory notebook
CITE.ipynb		CITE.ipynb
CITE_seq_colab.ipynb		CITE_seq_colab.ipynb
ECCITE CTCL.ipynb		ECCITE CTCL.ipynb
ECCITE ctrl.ipynb		ECCITE ctrl.ipynb
REAP.ipynb		REAP.ipynb
license.txt		license.txt
protaccel.py		protaccel.py
readme.md		readme.md
tenX 10k.ipynb		tenX 10k.ipynb
tenX 1k.ipynb		tenX 1k.ipynb

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