update function descriptions

pachterlab · May 25, 2024 · 2707b01 · 2707b01
1 parent 9feb4b0
commit 2707b01
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diff --git a/gget/gget_ref.py b/gget/gget_ref.py
@@ -68,7 +68,7 @@ def ref(
     Args:
     - species         Defines the species for which the reference should be fetched in the format "<genus>_<species>",
                       e.g. species = "homo_sapiens".
-                      Supported shortcuts: human, mouse, human_grch37
+                      Supported shortcuts: "human", "mouse", "human_grch37" (accesses the GRCh37 genome assembly)
     - which           Defines which results to return.
                       Default: 'all' -> Returns all available results.
                       Possible entries are one or a combination (as a list of strings) of the following:

diff --git a/gget/main.py b/gget/main.py
@@ -88,8 +88,7 @@ def main():
         default=None,
         help=(
             "Species or database to be searched. Species should be passed in the format 'genus_species', e.g. 'homo_sapiens'.\n"
-            "To pass a specific database, enter the name of the core database and release number, e.g. 'mus_musculus_dba2j_core_105_1'.\n"
-            "All available databases for each Ensembl release can be found here: http://ftp.ensembl.org/pub/"
+            "Supported shortcuts: 'human', 'mouse', 'human_grch37' (accesses the GRCh37 genome assembly)"
         ),
     )
     parser_ref.add_argument(