Skip to content

Commit

Permalink
Update ref.md
Browse files Browse the repository at this point in the history
  • Loading branch information
lauraluebbert committed Aug 15, 2023
1 parent acc57b0 commit a31f5e8
Showing 1 changed file with 3 additions and 0 deletions.
3 changes: 3 additions & 0 deletions docs/src/ref.md
Original file line number Diff line number Diff line change
Expand Up @@ -49,6 +49,8 @@ kb ref -i INDEX -g T2G -f1 FASTA $(gget ref --ftp -w dna,gtf homo_sapiens)
```
→ kb ref builds a reference index using the latest DNA and GTF files of species **Homo sapiens** passed to it by `gget ref`.

<br/><br/>

**List all available genomes from Ensembl release 103:**
```bash
gget ref --list_species -r 103
Expand All @@ -60,6 +62,7 @@ gget.ref(species=None, list_species=True, release=103)
&rarr; Returns a list with all available genomes (checks if GTF and FASTAs are available) from Ensembl release 103.
(If no release is specified, `gget ref` will always return information from the latest Ensembl release.)

<br/><br/>

**Get the genome reference for a specific species:**
```bash
Expand Down

0 comments on commit a31f5e8

Please sign in to comment.