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Sync dev and main #134

Merged
merged 24 commits into from
May 30, 2024
Merged

Sync dev and main #134

merged 24 commits into from
May 30, 2024

Commits on May 27, 2024

  1. Merge pull request #133 from pachterlab/dev 

    Dev -> main
    @lauraluebbert
    lauraluebbert committed May 27, 2024
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  2. Update test_cosmic.py

    @lauraluebbert
    lauraluebbert committed May 27, 2024
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  3. Update test_cosmic.py

    @lauraluebbert
    lauraluebbert committed May 27, 2024
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  4. Update test_cosmic.py

    @lauraluebbert
    lauraluebbert committed May 27, 2024
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  5. Update test_cosmic.py

    @lauraluebbert
    lauraluebbert committed May 27, 2024
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  6. Fix cancer_example download

    @lauraluebbert
    lauraluebbert committed May 27, 2024
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  7. Debug default out

    @lauraluebbert
    lauraluebbert committed May 27, 2024
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  8. Also delete tarred folder and add sleep to prevent 429 errors

    @lauraluebbert
    lauraluebbert committed May 27, 2024
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Commits on May 28, 2024

  1. Change default k=30

    @lauraluebbert
    lauraluebbert committed May 28, 2024
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  2. Change default k=30

    @lauraluebbert
    lauraluebbert committed May 28, 2024
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  3. Change default k=30

    @lauraluebbert
    lauraluebbert committed May 28, 2024
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  4. Change default k=30

    @lauraluebbert
    lauraluebbert committed May 28, 2024
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  5. Update updates.md

    @lauraluebbert
    lauraluebbert committed May 28, 2024
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  6. Update updates.md

    @lauraluebbert
    lauraluebbert committed May 28, 2024
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  7. Improve help message

    @lauraluebbert
    lauraluebbert committed May 28, 2024
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  8. Improve help message

    @lauraluebbert
    lauraluebbert committed May 28, 2024
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  9. Update mutate.md

    @lauraluebbert
    lauraluebbert committed May 28, 2024
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  10. Update mutate.md

    @lauraluebbert
    lauraluebbert committed May 28, 2024
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  11. Update mutate.md

    @lauraluebbert
    lauraluebbert committed May 28, 2024
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  12. Update mutate.md

    @lauraluebbert
    lauraluebbert committed May 28, 2024
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Commits on May 29, 2024

  1. Increase sleep time to avoid 429 errors

    @lauraluebbert
    lauraluebbert committed May 29, 2024
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Commits on May 30, 2024

  1. throw error when grch_version=38 combined with mc cancer

    @lauraluebbert
    lauraluebbert committed May 30, 2024
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  2. Update updates.md

    @lauraluebbert
    lauraluebbert committed May 30, 2024
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  3. Update updates.md

    @lauraluebbert
    lauraluebbert committed May 30, 2024
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