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what does pigeon filter do? #561

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chilampoon opened this issue Jan 23, 2023 · 3 comments
Closed

what does pigeon filter do? #561

chilampoon opened this issue Jan 23, 2023 · 3 comments

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@chilampoon
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chilampoon commented Jan 23, 2023

Hi there, I was running the isoseq workflow and I was wondering what does pigeon filter do?
Is it the random forest classifier from SQUANTI3 to classify isoforms and artifacts and filter out those artifacts? Thanks

@chilampoon
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chilampoon commented Jan 23, 2023

Oh nvm i saw the filtering reasons here

But I am also curious if the program implements that RF classifier

@armintoepfer
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Pinging @jmattick @derekwbarnett

@derekwbarnett
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No, it only does the equivalent of SQANTI’s “rule filter”, not the RF filter.

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