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Isoseq3 cluster fatal run #672

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EglantineMB opened this issue Apr 5, 2024 · 2 comments
Closed

Isoseq3 cluster fatal run #672

EglantineMB opened this issue Apr 5, 2024 · 2 comments
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IsoSeq

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@EglantineMB
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Package name
isoseq3

Conda environment
isoseq3

Describe the bug
isoseq3 cluster stops with fatal error

Error message
20240405 08:10:23.800 -|- FATAL -|- Run -|- 0x2b27eb67d980|| -|- isoseq cluster ERROR: map::at

To Reproduce
from flnc file provided by sequencing center:

isoseq3 cluster flnc-1.bam test.bam

Expected behavior
I would have expected to obtain a set of clustered isoforms called test.bam
@armintoepfer
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Can you please provide an example to reproduce

@zeeev zeeev added the IsoSeq label May 29, 2024
@armintoepfer
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Lack of input, closing

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IsoSeq
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@zeeev @armintoepfer @EglantineMB