You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
I don't see f_G or f_{r_d} in the previous list of equations. Do you mean G(z, z') and f_d(z') ?
I'm also not sure I understand why germination is part of the go_discrete kernel. Shouldn't that be part of leave_discrete for a seed bank? The current formulation seems more like a seedling bank to me.
The text was updated successfully, but these errors were encountered:
Ah, so the f_G and f_{r_d} refer to functions in the list below that line (see equations for the growth model (2) and recruit size (5)). reckon I should move that line to be closer to them?
re: 2 - that's a way of saying "only viable seeds in the seedbank". We provide a bit more detail in the full model description in the data paper the model appears in. It's worth noting that you could move the g_i term to the leave_discrete kernel and get almost exactly the same values (difference is ~ 3e-12).
Ohh, I see them now! Thanks, this makes sense now. And it makes sense to think of the g_i term as seed viability. It's the probability that it can become a seedling, but not describing it becoming a seedling of size z', which goes in the leave_discrete kernel.
https://github.com/levisc8/ipmr/blob/ad143c10e68bd40a2cac605bbd0f599314a1329d/vignettes/general-ipms.Rmd#L47
I don't see f_G or f_{r_d} in the previous list of equations. Do you mean G(z, z') and f_d(z') ?
I'm also not sure I understand why germination is part of the
go_discrete
kernel. Shouldn't that be part ofleave_discrete
for a seed bank? The current formulation seems more like a seedling bank to me.The text was updated successfully, but these errors were encountered: