Merge branch 'main' into melt-var-name-multiindex-columns

.circleci/config.yml

@@ -72,10 +72,6 @@ jobs:
           no_output_timeout: 30m # Sometimes the tests won't generate any output, make sure the job doesn't get killed by that
           command: |
             pip3 install cibuildwheel==2.15.0
-            # When this is a nightly wheel build, allow picking up NumPy 2.0 dev wheels:
-            if [[ "$IS_SCHEDULE_DISPATCH" == "true" || "$IS_PUSH" != 'true' ]]; then
-                export CIBW_ENVIRONMENT="PIP_EXTRA_INDEX_URL=https://pypi.anaconda.org/scientific-python-nightly-wheels/simple"
-            fi
             cibuildwheel --prerelease-pythons --output-dir wheelhouse
 
           environment:

.github/ISSUE_TEMPLATE/pdep_vote.yaml

@@ -0,0 +1,74 @@
+name: PDEP Vote
+description: Call for a vote on a PDEP
+title: "VOTE: "
+labels: [Vote]
+
+body:
+  - type: markdown
+    attributes:
+      value: >
+        As per [PDEP-1](https://pandas.pydata.org/pdeps/0001-purpose-and-guidelines.html), the following issue template should be used when a
+        maintainer has opened a PDEP discussion and is ready to call for a vote.
+  - type: checkboxes
+    attributes:
+      label: Locked issue
+      options:
+        - label: >
+            I locked this voting issue so that only voting members are able to cast their votes or
+            comment on this issue.
+          required: true
+  - type: input
+    id: PDEP-name
+    attributes:
+      label: PDEP number and title
+      placeholder: >
+        PDEP-1: Purpose and guidelines
+    validations:
+      required: true
+  - type: input
+    id: PDEP-link
+    attributes:
+      label: Pull request with discussion
+      description: e.g. https://github.com/pandas-dev/pandas/pull/47444
+    validations:
+      required: true
+  - type: input
+    id: PDEP-rendered-link
+    attributes:
+      label: Rendered PDEP for easy reading
+      description: e.g. https://github.com/pandas-dev/pandas/pull/47444/files?short_path=7c449e6#diff-7c449e698132205b235c501f7e47ebba38da4d2b7f9492c98f16745dba787041
+    validations:
+      required: true
+  - type: input
+    id: PDEP-number-of-discussion-participants
+    attributes:
+      label: Discussion participants
+      description: >
+        You may find it useful to list or total the number of participating members in the
+        PDEP discussion PR. This would be the maximum possible disapprove votes.
+      placeholder: >
+        14 voting members participated in the PR discussion thus far.
+  - type: input
+    id: PDEP-vote-end
+    attributes:
+      label: Voting will close in 15 days.
+      description: The voting period end date. ('Voting will close in 15 days.' will be automatically written)
+  - type: markdown
+    attributes:
+      value: ---
+  - type: textarea
+    id: Vote
+    attributes:
+      label: Vote
+      value: |
+        Cast your vote in a comment below.
+        * +1: approve.
+        * 0: abstain.
+            * Reason: A one sentence reason is required.
+        * -1: disapprove
+            * Reason: A one sentence reason is required.
+        A disapprove vote requires prior participation in the linked discussion PR.
+
+        @pandas-dev/pandas-core
+    validations:
+      required: true

.github/workflows/cache-cleanup-weekly.yml → .github/workflows/cache-cleanup-daily.yml

@@ -1,8 +1,8 @@
-name: Purge caches once a week
+name: Purge caches daily
 on:
   schedule:
-    # 4:10 UTC on Sunday
-    - cron: "10 4 * * 0"
+    # 4:10 UTC daily
+    - cron: "10 4 * * *"
 
 jobs:
   cleanup:

.github/workflows/code-checks.yml

@@ -85,7 +85,7 @@ jobs:
         echo "PYTHONPATH=$PYTHONPATH" >> $GITHUB_ENV
       if: ${{ steps.build.outcome == 'success' && always() }}
 
-    - name: Typing + pylint
+    - name: Typing
       uses: pre-commit/action@v3.0.1
       with:
         extra_args: --verbose --hook-stage manual --all-files

.github/workflows/unit-tests.yml

@@ -314,7 +314,7 @@ jobs:
     timeout-minutes: 90
 
     concurrency:
-      #https://github.community/t/concurrecy-not-work-for-push/183068/7
+      # https://github.community/t/concurrecy-not-work-for-push/183068/7
       group: ${{ github.event_name == 'push' && github.run_number || github.ref }}-${{ matrix.os }}-${{ matrix.pytest_target }}-dev
       cancel-in-progress: true
 
@@ -346,3 +346,62 @@ jobs:
 
       - name: Run Tests
         uses: ./.github/actions/run-tests
+
+  emscripten:
+    # Note: the Python version, Emscripten toolchain version are determined
+    # by the Pyodide version. The appropriate versions can be found in the
+    # Pyodide repodata.json "info" field, or in the Makefile.envs file:
+    # https://github.com/pyodide/pyodide/blob/stable/Makefile.envs#L2
+    # The Node.js version can be determined via Pyodide:
+    # https://pyodide.org/en/stable/usage/index.html#node-js
+    name: Pyodide build
+    runs-on: ubuntu-22.04
+    concurrency:
+      # https://github.community/t/concurrecy-not-work-for-push/183068/7
+      group: ${{ github.event_name == 'push' && github.run_number || github.ref }}-wasm
+      cancel-in-progress: true
+    steps:
+      - name: Checkout pandas Repo
+        uses: actions/checkout@v4
+        with:
+          fetch-depth: 0
+
+      - name: Set up Python for Pyodide
+        id: setup-python
+        uses: actions/setup-python@v5
+        with:
+          python-version: '3.11.3'
+
+      - name: Set up Emscripten toolchain
+        uses: mymindstorm/setup-emsdk@v14
+        with:
+          version: '3.1.46'
+          actions-cache-folder: emsdk-cache
+
+      - name: Install pyodide-build
+        run: pip install "pyodide-build==0.25.1"
+
+      - name: Build pandas for Pyodide
+        run: |
+          pyodide build
+
+      - name: Set up Node.js
+        uses: actions/setup-node@v4
+        with:
+          node-version: '18'
+
+      - name: Set up Pyodide virtual environment
+        run: |
+          pyodide venv .venv-pyodide
+          source .venv-pyodide/bin/activate
+          pip install dist/*.whl
+
+      - name: Test pandas for Pyodide
+        env:
+          PANDAS_CI: 1
+        run: |
+          source .venv-pyodide/bin/activate
+          pip install pytest hypothesis
+          # do not import pandas from the checked out repo
+          cd ..
+          python -c 'import pandas as pd; pd.test(extra_args=["-m not clipboard and not single_cpu and not slow and not network and not db"])'

.github/workflows/wheels.yml

@@ -139,27 +139,14 @@ jobs:
         shell: bash -el {0}
         run: echo "sdist_name=$(cd ./dist && ls -d */)" >> "$GITHUB_ENV"
 
-      - name: Build normal wheels
-        if: ${{ (env.IS_SCHEDULE_DISPATCH != 'true' || env.IS_PUSH == 'true') }}
-        uses: pypa/cibuildwheel@v2.17.0
+      - name: Build wheels
+        uses: pypa/cibuildwheel@v2.18.0
         with:
          package-dir: ./dist/${{ startsWith(matrix.buildplat[1], 'macosx') && env.sdist_name || needs.build_sdist.outputs.sdist_file }}
         env:
           CIBW_PRERELEASE_PYTHONS: True
           CIBW_BUILD: ${{ matrix.python[0] }}-${{ matrix.buildplat[1] }}
 
-      - name: Build nightly wheels (with NumPy pre-release)
-        if: ${{ (env.IS_SCHEDULE_DISPATCH == 'true' && env.IS_PUSH != 'true') }}
-        uses: pypa/cibuildwheel@v2.17.0
-        with:
-         package-dir: ./dist/${{ startsWith(matrix.buildplat[1], 'macosx') && env.sdist_name || needs.build_sdist.outputs.sdist_file }}
-        env:
-          # The nightly wheels should be build witht he NumPy 2.0 pre-releases
-          # which requires the additional URL.
-          CIBW_ENVIRONMENT: PIP_EXTRA_INDEX_URL=https://pypi.anaconda.org/scientific-python-nightly-wheels/simple
-          CIBW_PRERELEASE_PYTHONS: True
-          CIBW_BUILD: ${{ matrix.python[0] }}-${{ matrix.buildplat[1] }}
-
       - name: Set up Python
         uses: mamba-org/setup-micromamba@v1
         with:

.pre-commit-config.yaml

@@ -16,10 +16,10 @@ ci:
     autofix_prs: false
     autoupdate_schedule: monthly
     # manual stage hooks
-    skip: [pylint, pyright, mypy]
+    skip: [pyright, mypy]
 repos:
 -   repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.3.1
+    rev: v0.4.3
     hooks:
     -   id: ruff
         args: [--exit-non-zero-on-fix]
@@ -30,16 +30,10 @@ repos:
         files: ^pandas
         exclude: ^pandas/tests
         args: [--select, "ANN001,ANN2", --fix-only, --exit-non-zero-on-fix]
-    -   id: ruff
-        name: ruff-use-pd_array-in-core
-        alias: ruff-use-pd_array-in-core
-        files: ^pandas/core/
-        exclude: ^pandas/core/api\.py$
-        args: [--select, "ICN001", --exit-non-zero-on-fix]
     -   id: ruff-format
         exclude: ^scripts
 -   repo: https://github.com/jendrikseipp/vulture
-    rev: 'v2.10'
+    rev: 'v2.11'
     hooks:
       - id: vulture
         entry: python scripts/run_vulture.py
@@ -52,12 +46,12 @@ repos:
         types_or: [python, rst, markdown, cython, c]
         additional_dependencies: [tomli]
 -   repo: https://github.com/MarcoGorelli/cython-lint
-    rev: v0.16.0
+    rev: v0.16.2
     hooks:
     -   id: cython-lint
     -   id: double-quote-cython-strings
 -   repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.5.0
+    rev: v4.6.0
     hooks:
     -   id: check-case-conflict
     -   id: check-toml
@@ -73,31 +67,12 @@ repos:
     -   id: fix-encoding-pragma
         args: [--remove]
     -   id: trailing-whitespace
--   repo: https://github.com/pylint-dev/pylint
-    rev: v3.0.1
-    hooks:
-    -   id: pylint
-        stages: [manual]
-        args: [--load-plugins=pylint.extensions.redefined_loop_name, --fail-on=I0021]
-    -   id: pylint
-        alias: redefined-outer-name
-        name: Redefining name from outer scope
-        files: ^pandas/
-        exclude: |
-            (?x)
-            ^pandas/tests  # keep excluded
-            |/_testing/  # keep excluded
-            |^pandas/util/_test_decorators\.py  # keep excluded
-            |^pandas/_version\.py  # keep excluded
-            |^pandas/conftest\.py  # keep excluded
-        args: [--disable=all, --enable=redefined-outer-name]
-        stages: [manual]
 -   repo: https://github.com/PyCQA/isort
-    rev: 5.12.0
+    rev: 5.13.2
     hooks:
     -   id: isort
 -   repo: https://github.com/asottile/pyupgrade
-    rev: v3.15.0
+    rev: v3.15.2
     hooks:
     -   id: pyupgrade
         args: [--py39-plus]
@@ -115,8 +90,9 @@ repos:
     rev: v0.9.1
     hooks:
     - id: sphinx-lint
+      args: ["--enable", "all", "--disable", "line-too-long"]
 -   repo: https://github.com/pre-commit/mirrors-clang-format
-    rev: v17.0.6
+    rev: v18.1.4
     hooks:
     - id: clang-format
       files: ^pandas/_libs/src|^pandas/_libs/include
@@ -133,7 +109,7 @@ repos:
         types: [python]
         stages: [manual]
         additional_dependencies: &pyright_dependencies
-        - pyright@1.1.351
+        - pyright@1.1.352
     -   id: pyright
         # note: assumes python env is setup and activated
         name: pyright reportGeneralTypeIssues