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REGR: to_csv created corrupt ZIP files when there are more rows than …
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…chunksize (#38728)
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twoertwein committed Dec 29, 2020
1 parent 31e0743 commit fb35344
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Showing 3 changed files with 47 additions and 5 deletions.
1 change: 1 addition & 0 deletions doc/source/whatsnew/v1.2.1.rst
Original file line number Diff line number Diff line change
Expand Up @@ -15,6 +15,7 @@ including other versions of pandas.
Fixed regressions
~~~~~~~~~~~~~~~~~
- The deprecated attributes ``_AXIS_NAMES`` and ``_AXIS_NUMBERS`` of :class:`DataFrame` and :class:`Series` will no longer show up in ``dir`` or ``inspect.getmembers`` calls (:issue:`38740`)
- :meth:`to_csv` created corrupted zip files when there were more rows than ``chunksize`` (issue:`38714`)
-

.. ---------------------------------------------------------------------------
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29 changes: 24 additions & 5 deletions pandas/io/common.py
Original file line number Diff line number Diff line change
Expand Up @@ -4,10 +4,10 @@
from collections import abc
import dataclasses
import gzip
from io import BufferedIOBase, BytesIO, RawIOBase, TextIOWrapper
from io import BufferedIOBase, BytesIO, RawIOBase, StringIO, TextIOWrapper
import mmap
import os
from typing import IO, Any, AnyStr, Dict, List, Mapping, Optional, Tuple, cast
from typing import IO, Any, AnyStr, Dict, List, Mapping, Optional, Tuple, Union, cast
from urllib.parse import (
urljoin,
urlparse as parse_url,
Expand Down Expand Up @@ -713,17 +713,36 @@ def __init__(
archive_name: Optional[str] = None,
**kwargs,
):
if mode in ["wb", "rb"]:
mode = mode.replace("b", "")
mode = mode.replace("b", "")
self.archive_name = archive_name
self.multiple_write_buffer: Optional[Union[StringIO, BytesIO]] = None

kwargs_zip: Dict[str, Any] = {"compression": zipfile.ZIP_DEFLATED}
kwargs_zip.update(kwargs)

super().__init__(file, mode, **kwargs_zip) # type: ignore[arg-type]

def write(self, data):
# buffer multiple write calls, write on flush
if self.multiple_write_buffer is None:
self.multiple_write_buffer = (
BytesIO() if isinstance(data, bytes) else StringIO()
)
self.multiple_write_buffer.write(data)

def flush(self) -> None:
# write to actual handle and close write buffer
if self.multiple_write_buffer is None or self.multiple_write_buffer.closed:
return

# ZipFile needs a non-empty string
archive_name = self.archive_name or self.filename or "zip"
super().writestr(archive_name, data)
with self.multiple_write_buffer:
super().writestr(archive_name, self.multiple_write_buffer.getvalue())

def close(self):
self.flush()
super().close()

@property
def closed(self):
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22 changes: 22 additions & 0 deletions pandas/tests/io/formats/test_to_csv.py
Original file line number Diff line number Diff line change
Expand Up @@ -640,3 +640,25 @@ def test_to_csv_encoding_binary_handle(self, mode):

handle.seek(0)
assert handle.read().startswith(b'\xef\xbb\xbf""')


def test_to_csv_iterative_compression_name(compression):
# GH 38714
df = tm.makeDataFrame()
with tm.ensure_clean() as path:
df.to_csv(path, compression=compression, chunksize=1)
tm.assert_frame_equal(
pd.read_csv(path, compression=compression, index_col=0), df
)


def test_to_csv_iterative_compression_buffer(compression):
# GH 38714
df = tm.makeDataFrame()
with io.BytesIO() as buffer:
df.to_csv(buffer, compression=compression, chunksize=1)
buffer.seek(0)
tm.assert_frame_equal(
pd.read_csv(buffer, compression=compression, index_col=0), df
)
assert not buffer.closed

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