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schemas.py
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schemas.py
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"""Core pandera schema class definitions."""
# pylint: disable=too-many-lines
from __future__ import annotations
import copy
import itertools
import os
import traceback
import warnings
from functools import wraps
from pathlib import Path
from typing import (
TYPE_CHECKING,
Any,
Dict,
List,
Optional,
Type,
TypeVar,
Union,
cast,
overload,
)
import numpy as np
import pandas as pd
from . import check_utils, errors
from . import strategies as st
from .checks import Check
from .dtypes import DataType, UniqueSettings
from .engines import pandas_engine
from .error_formatters import (
format_generic_error_message,
format_vectorized_error_message,
reshape_failure_cases,
scalar_failure_case,
)
from .error_handlers import SchemaErrorHandler
from .hypotheses import Hypothesis
try:
from typing import Literal
except ImportError:
from typing_extensions import Literal # type: ignore[misc]
try:
from typing import Self # type: ignore[attr-defined]
except ImportError:
from typing_extensions import Self
if TYPE_CHECKING:
from pandera.schema_components import Column
N_INDENT_SPACES = 4
CheckList = Optional[
Union[Union[Check, Hypothesis], List[Union[Check, Hypothesis]]]
]
CheckListProperty = List[Union[Check, Hypothesis]]
PandasDtypeInputTypes = Union[
str,
type,
DataType,
Type,
pd.api.extensions.ExtensionDtype,
np.dtype,
None,
]
StrictType = Union[bool, Literal["filter"]]
TSeriesSchemaBase = TypeVar("TSeriesSchemaBase", bound="SeriesSchemaBase")
def _inferred_schema_guard(method):
"""
Invoking a method wrapped with this decorator will set _is_inferred to
False.
"""
@wraps(method)
def _wrapper(schema, *args, **kwargs):
new_schema = method(schema, *args, **kwargs)
if new_schema is not None and id(new_schema) != id(schema):
# if method returns a copy of the schema object,
# the original schema instance and the copy should be set to
# not inferred.
new_schema._is_inferred = False
return new_schema
return _wrapper
class DataFrameSchema: # pylint: disable=too-many-public-methods
"""A light-weight pandas DataFrame validator."""
def __init__(
self,
columns: Optional[Dict[Any, Column]] = None,
checks: CheckList = None,
index=None,
dtype: PandasDtypeInputTypes = None,
coerce: bool = False,
strict: StrictType = False,
name: Optional[str] = None,
ordered: bool = False,
unique: Optional[Union[str, List[str]]] = None,
report_duplicates: UniqueSettings = "all",
unique_column_names: bool = False,
title: Optional[str] = None,
description: Optional[str] = None,
) -> None:
"""Initialize DataFrameSchema validator.
:param columns: a dict where keys are column names and values are
Column objects specifying the datatypes and properties of a
particular column.
:type columns: mapping of column names and column schema component.
:param checks: dataframe-wide checks.
:param index: specify the datatypes and properties of the index.
:param dtype: datatype of the dataframe. This overrides the data
types specified in any of the columns. If a string is specified,
then assumes one of the valid pandas string values:
http://pandas.pydata.org/pandas-docs/stable/basics.html#dtypes.
:param coerce: whether or not to coerce all of the columns on
validation. This has no effect on columns where
``dtype=None``
:param strict: ensure that all and only the columns defined in the
schema are present in the dataframe. If set to 'filter',
only the columns in the schema will be passed to the validated
dataframe. If set to filter and columns defined in the schema
are not present in the dataframe, will throw an error.
:param name: name of the schema.
:param ordered: whether or not to validate the columns order.
:param unique: a list of columns that should be jointly unique.
:param report_duplicates: how to report unique errors
- `exclude_first`: report all duplicates except first occurence
- `exclude_last`: report all duplicates except last occurence
- `all`: (default) report all duplicates
:param unique_column_names: whether or not column names must be unique.
:param title: A human-readable label for the schema.
:param description: An arbitrary textual description of the schema.
:raises SchemaInitError: if impossible to build schema from parameters
:examples:
>>> import pandera as pa
>>>
>>> schema = pa.DataFrameSchema({
... "str_column": pa.Column(str),
... "float_column": pa.Column(float),
... "int_column": pa.Column(int),
... "date_column": pa.Column(pa.DateTime),
... })
Use the pandas API to define checks, which takes a function with
the signature: ``pd.Series -> Union[bool, pd.Series]`` where the
output series contains boolean values.
>>> schema_withchecks = pa.DataFrameSchema({
... "probability": pa.Column(
... float, pa.Check(lambda s: (s >= 0) & (s <= 1))),
...
... # check that the "category" column contains a few discrete
... # values, and the majority of the entries are dogs.
... "category": pa.Column(
... str, [
... pa.Check(lambda s: s.isin(["dog", "cat", "duck"])),
... pa.Check(lambda s: (s == "dog").mean() > 0.5),
... ]),
... })
See :ref:`here<DataFrameSchemas>` for more usage details.
"""
if checks is None:
checks = []
if isinstance(checks, (Check, Hypothesis)):
checks = [checks]
self.columns: Dict[Any, Column] = {} if columns is None else columns
if strict not in (
False,
True,
"filter",
):
raise errors.SchemaInitError(
"strict parameter must equal either `True`, `False`, "
"or `'filter'`."
)
self.checks: CheckListProperty = checks
self.index = index
self.strict: StrictType = strict
self.name: Optional[str] = name
self.dtype: PandasDtypeInputTypes = dtype # type: ignore
self._coerce = coerce
self._ordered = ordered
self._unique = unique
self._report_duplicates = report_duplicates
self._unique_column_names = unique_column_names
self._title = title
self._description = description
self._validate_schema()
self._set_column_names()
# this attribute is not meant to be accessed by users and is explicitly
# set to True in the case that a schema is created by infer_schema.
self._IS_INFERRED = False
# This restriction can be removed once logical types are introduced:
# https://github.com/pandera-dev/pandera/issues/788
if not coerce and isinstance(self.dtype, pandas_engine.PydanticModel):
raise errors.SchemaInitError(
"Specifying a PydanticModel type requires coerce=True."
)
@property
def coerce(self) -> bool:
"""Whether to coerce series to specified type."""
return self._coerce
@coerce.setter
def coerce(self, value: bool) -> None:
"""Set coerce attribute"""
self._coerce = value
@property
def unique(self):
"""List of columns that should be jointly unique."""
return self._unique
@unique.setter
def unique(self, value: Optional[Union[str, List[str]]]) -> None:
"""Set unique attribute."""
self._unique = [value] if isinstance(value, str) else value
@property
def ordered(self):
"""Whether or not to validate the columns order."""
return self._ordered
@ordered.setter
def ordered(self, value: bool) -> None:
"""Set ordered attribute"""
self._ordered = value
@property
def unique_column_names(self):
"""Whether multiple columns with the same name can be present."""
return self._unique_column_names
@unique_column_names.setter
def unique_column_names(self, value: bool) -> None:
"""Set allow_duplicated_column_names attribute"""
self._unique_column_names = value
@property
def title(self):
"""A human-readable label for the schema."""
return self._title
@property
def description(self):
"""An arbitrary textual description of the schema."""
return self._description
# the _is_inferred getter and setter methods are not public
@property
def _is_inferred(self) -> bool:
return self._IS_INFERRED
@_is_inferred.setter
def _is_inferred(self, value: bool) -> None:
self._IS_INFERRED = value
def _validate_schema(self) -> None:
for column_name, column in self.columns.items():
for check in column.checks:
if check.groupby is None or callable(check.groupby):
continue
nonexistent_groupby_columns = [
c for c in check.groupby if c not in self.columns
]
if nonexistent_groupby_columns:
raise errors.SchemaInitError(
f"groupby argument {nonexistent_groupby_columns} in "
f"Check for Column {column_name} not "
"specified in the DataFrameSchema."
)
def _set_column_names(self) -> None:
def _set_column_handler(column, column_name):
if column.name is not None and column.name != column_name:
warnings.warn(
f"resetting column for {column} to '{column_name}'."
)
elif column.name == column_name:
return column
return column.set_name(column_name)
self.columns = {
column_name: _set_column_handler(column, column_name)
for column_name, column in self.columns.items()
}
@property
def dtypes(self) -> Dict[str, DataType]:
# pylint:disable=anomalous-backslash-in-string
"""
A dict where the keys are column names and values are
:class:`~pandera.dtypes.DataType` s for the column. Excludes columns
where `regex=True`.
:returns: dictionary of columns and their associated dtypes.
"""
regex_columns = [
name for name, col in self.columns.items() if col.regex
]
if regex_columns:
warnings.warn(
"Schema has columns specified as regex column names: "
f"{regex_columns}. Use the `get_dtypes` to get the datatypes "
"for these columns.",
UserWarning,
)
return {n: c.dtype for n, c in self.columns.items() if not c.regex}
def get_dtypes(self, dataframe: pd.DataFrame) -> Dict[str, DataType]:
"""
Same as the ``dtype`` property, but expands columns where
``regex == True`` based on the supplied dataframe.
:returns: dictionary of columns and their associated dtypes.
"""
regex_dtype = {}
for _, column in self.columns.items():
if column.regex:
regex_dtype.update(
{
c: column.dtype
for c in column.get_regex_columns(dataframe.columns)
}
)
return {
**{n: c.dtype for n, c in self.columns.items() if not c.regex},
**regex_dtype,
}
@property
def dtype(
self,
) -> DataType:
"""Get the dtype property."""
return self._dtype # type: ignore
@dtype.setter
def dtype(self, value: PandasDtypeInputTypes) -> None:
"""Set the pandas dtype property."""
self._dtype = pandas_engine.Engine.dtype(value) if value else None
def _coerce_dtype(self, obj: pd.DataFrame) -> pd.DataFrame:
if self.dtype is None:
raise ValueError(
"dtype argument is None. Must specify this argument "
"to coerce dtype"
)
try:
return self.dtype.try_coerce(obj)
except errors.ParserError as exc:
raise errors.SchemaError(
self,
obj,
(
f"Error while coercing '{self.name}' to type "
f"{self.dtype}: {exc}\n{exc.failure_cases}"
),
failure_cases=exc.failure_cases,
check=f"coerce_dtype('{self.dtype}')",
) from exc
def coerce_dtype(self, obj: pd.DataFrame) -> pd.DataFrame:
"""Coerce dataframe to the type specified in dtype.
:param obj: dataframe to coerce.
:returns: dataframe with coerced dtypes
"""
error_handler = SchemaErrorHandler(lazy=True)
def _try_coercion(coerce_fn, obj):
try:
return coerce_fn(obj)
except errors.SchemaError as exc:
error_handler.collect_error("dtype_coercion_error", exc)
return obj
for colname, col_schema in self.columns.items():
if col_schema.regex:
try:
matched_columns = col_schema.get_regex_columns(obj.columns)
except errors.SchemaError:
matched_columns = pd.Index([])
for matched_colname in matched_columns:
if col_schema.coerce or self.coerce:
obj[matched_colname] = _try_coercion(
col_schema.coerce_dtype, obj[matched_colname]
)
elif (
(col_schema.coerce or self.coerce)
and self.dtype is None
and colname in obj
):
obj[colname] = _try_coercion(
col_schema.coerce_dtype, obj[colname]
)
if self.dtype is not None:
obj = _try_coercion(self._coerce_dtype, obj)
if self.index is not None and (self.index.coerce or self.coerce):
index_schema = copy.deepcopy(self.index)
if self.coerce:
# coercing at the dataframe-level should apply index coercion
# for both single- and multi-indexes.
index_schema._coerce = True
coerced_index = _try_coercion(index_schema.coerce_dtype, obj.index)
if coerced_index is not None:
obj.index = coerced_index
if error_handler.collected_errors:
raise errors.SchemaErrors(
self, error_handler.collected_errors, obj
)
return obj
def validate(
self,
check_obj: pd.DataFrame,
head: Optional[int] = None,
tail: Optional[int] = None,
sample: Optional[int] = None,
random_state: Optional[int] = None,
lazy: bool = False,
inplace: bool = False,
) -> pd.DataFrame:
"""Check if all columns in a dataframe have a column in the Schema.
:param pd.DataFrame check_obj: the dataframe to be validated.
:param head: validate the first n rows. Rows overlapping with `tail` or
`sample` are de-duplicated.
:param tail: validate the last n rows. Rows overlapping with `head` or
`sample` are de-duplicated.
:param sample: validate a random sample of n rows. Rows overlapping
with `head` or `tail` are de-duplicated.
:param random_state: random seed for the ``sample`` argument.
:param lazy: if True, lazily evaluates dataframe against all validation
checks and raises a ``SchemaErrors``. Otherwise, raise
``SchemaError`` as soon as one occurs.
:param inplace: if True, applies coercion to the object of validation,
otherwise creates a copy of the data.
:returns: validated ``DataFrame``
:raises SchemaError: when ``DataFrame`` violates built-in or custom
checks.
:example:
Calling ``schema.validate`` returns the dataframe.
>>> import pandas as pd
>>> import pandera as pa
>>>
>>> df = pd.DataFrame({
... "probability": [0.1, 0.4, 0.52, 0.23, 0.8, 0.76],
... "category": ["dog", "dog", "cat", "duck", "dog", "dog"]
... })
>>>
>>> schema_withchecks = pa.DataFrameSchema({
... "probability": pa.Column(
... float, pa.Check(lambda s: (s >= 0) & (s <= 1))),
...
... # check that the "category" column contains a few discrete
... # values, and the majority of the entries are dogs.
... "category": pa.Column(
... str, [
... pa.Check(lambda s: s.isin(["dog", "cat", "duck"])),
... pa.Check(lambda s: (s == "dog").mean() > 0.5),
... ]),
... })
>>>
>>> schema_withchecks.validate(df)[["probability", "category"]]
probability category
0 0.10 dog
1 0.40 dog
2 0.52 cat
3 0.23 duck
4 0.80 dog
5 0.76 dog
"""
if not check_utils.is_table(check_obj):
raise TypeError(f"expected pd.DataFrame, got {type(check_obj)}")
if hasattr(check_obj, "dask"):
# special case for dask dataframes
if inplace:
check_obj = check_obj.pandera.add_schema(self)
else:
check_obj = check_obj.copy()
check_obj = check_obj.map_partitions(
self._validate,
head=head,
tail=tail,
sample=sample,
random_state=random_state,
lazy=lazy,
inplace=inplace,
meta=check_obj,
)
return check_obj.pandera.add_schema(self)
return self._validate(
check_obj=check_obj,
head=head,
tail=tail,
sample=sample,
random_state=random_state,
lazy=lazy,
inplace=inplace,
)
def _validate(
self,
check_obj: pd.DataFrame,
head: Optional[int] = None,
tail: Optional[int] = None,
sample: Optional[int] = None,
random_state: Optional[int] = None,
lazy: bool = False,
inplace: bool = False,
) -> pd.DataFrame:
# pylint: disable=too-many-locals,too-many-branches,too-many-statements
if self._is_inferred:
warnings.warn(
f"This {type(self)} is an inferred schema that hasn't been "
"modified. It's recommended that you refine the schema "
"by calling `add_columns`, `remove_columns`, or "
"`update_columns` before using it to validate data.",
UserWarning,
)
error_handler = SchemaErrorHandler(lazy)
if not inplace:
check_obj = check_obj.copy()
if hasattr(check_obj, "pandera"):
check_obj = check_obj.pandera.add_schema(self)
# dataframe strictness check makes sure all columns in the dataframe
# are specified in the dataframe schema
if self.strict or self.ordered:
column_names: List[Any] = []
for col_name, col_schema in self.columns.items():
if col_schema.regex:
try:
column_names.extend(
col_schema.get_regex_columns(check_obj.columns)
)
except errors.SchemaError:
pass
elif col_name in check_obj.columns:
column_names.append(col_name)
# ordered "set" of columns
sorted_column_names = iter(dict.fromkeys(column_names))
expanded_column_names = frozenset(column_names)
# drop adjacent duplicated column names
if check_obj.columns.has_duplicates:
columns = [k for k, _ in itertools.groupby(check_obj.columns)]
else:
columns = check_obj.columns
filter_out_columns = []
for column in columns:
is_schema_col = column in expanded_column_names
if (self.strict is True) and not is_schema_col:
msg = (
f"column '{column}' not in {self.__class__.__name__}"
f" {self.columns}"
)
error_handler.collect_error(
"column_not_in_schema",
errors.SchemaError(
self,
check_obj,
msg,
failure_cases=scalar_failure_case(column),
check="column_in_schema",
),
)
if self.strict == "filter" and not is_schema_col:
filter_out_columns.append(column)
if self.ordered and is_schema_col:
try:
next_ordered_col = next(sorted_column_names)
except StopIteration:
pass
if next_ordered_col != column:
error_handler.collect_error(
"column_not_ordered",
errors.SchemaError(
self,
check_obj,
message=f"column '{column}' out-of-order",
failure_cases=scalar_failure_case(column),
check="column_ordered",
),
)
if self.strict == "filter":
check_obj.drop(labels=filter_out_columns, inplace=True, axis=1)
if self._unique_column_names:
failed = check_obj.columns[check_obj.columns.duplicated()]
if failed.any():
msg = (
"dataframe contains multiple columns with label(s): "
f"{failed.tolist()}"
)
error_handler.collect_error(
"duplicate_dataframe_column_labels",
errors.SchemaError(
self,
check_obj,
msg,
failure_cases=scalar_failure_case(failed),
check="dataframe_column_labels_unique",
),
)
# check for columns that are not in the dataframe and collect columns
# that are not in the dataframe that should be excluded for lazy
# validation
lazy_exclude_columns = []
for colname, col_schema in self.columns.items():
if (
not col_schema.regex
and colname not in check_obj
and col_schema.required
):
if lazy:
lazy_exclude_columns.append(colname)
msg = (
f"column '{colname}' not in dataframe\n{check_obj.head()}"
)
error_handler.collect_error(
"column_not_in_dataframe",
errors.SchemaError(
self,
check_obj,
msg,
failure_cases=scalar_failure_case(colname),
check="column_in_dataframe",
),
)
# coerce data types
if (
self.coerce
or (self.index is not None and self.index.coerce)
or any(col.coerce for col in self.columns.values())
):
try:
check_obj = self.coerce_dtype(check_obj)
except errors.SchemaErrors as err:
for schema_error_dict in err.schema_errors:
if not lazy:
# raise the first error immediately if not doing lazy
# validation
raise schema_error_dict["error"]
error_handler.collect_error(
"schema_component_check", schema_error_dict["error"]
)
# collect schema components for validation
schema_components = []
for col_name, col in self.columns.items():
if (
col.required or col_name in check_obj
) and col_name not in lazy_exclude_columns:
col = copy.deepcopy(col)
col._coerce = False # type: ignore
if self.dtype is not None:
# override column dtype with dataframe dtype
col.dtype = self.dtype
schema_components.append(col)
if self.index is not None:
schema_components.append(self.index)
df_to_validate = _pandas_obj_to_validate(
check_obj, head, tail, sample, random_state
)
check_results = []
# schema-component-level checks
for schema_component in schema_components:
try:
result = schema_component(
df_to_validate,
lazy=lazy,
# don't make a copy of the data
inplace=True,
)
check_results.append(check_utils.is_table(result))
except errors.SchemaError as err:
error_handler.collect_error("schema_component_check", err)
except errors.SchemaErrors as err:
for schema_error_dict in err.schema_errors:
error_handler.collect_error(
"schema_component_check", schema_error_dict["error"]
)
# dataframe-level checks
for check_index, check in enumerate(self.checks):
try:
check_results.append(
_handle_check_results(
self, check_index, check, df_to_validate
)
)
except errors.SchemaError as err:
error_handler.collect_error("dataframe_check", err)
if self.unique:
keep_setting = convert_uniquesettings(self._report_duplicates)
# NOTE: fix this pylint error
# pylint: disable=not-an-iterable
temp_unique: List[List] = (
[self.unique]
if all(isinstance(x, str) for x in self.unique)
else self.unique
)
for lst in temp_unique:
duplicates = df_to_validate.duplicated(
subset=lst, keep=keep_setting
)
if duplicates.any():
# NOTE: this is a hack to support pyspark.pandas, need to
# figure out a workaround to error: "Cannot combine the
# series or dataframe because it comes from a different
# dataframe."
if type(duplicates).__module__.startswith(
"pyspark.pandas"
):
# pylint: disable=import-outside-toplevel
import pyspark.pandas as ps
with ps.option_context(
"compute.ops_on_diff_frames", True
):
failure_cases = df_to_validate.loc[duplicates, lst]
else:
failure_cases = df_to_validate.loc[duplicates, lst]
failure_cases = reshape_failure_cases(failure_cases)
error_handler.collect_error(
"duplicates",
errors.SchemaError(
self,
check_obj,
f"columns '{*lst,}' not unique:\n{failure_cases}",
failure_cases=failure_cases,
check="multiple_fields_uniqueness",
),
)
if lazy and error_handler.collected_errors:
raise errors.SchemaErrors(
self, error_handler.collected_errors, check_obj
)
assert all(check_results), "all check results must be True."
return check_obj
def __call__(
self,
dataframe: pd.DataFrame,
head: Optional[int] = None,
tail: Optional[int] = None,
sample: Optional[int] = None,
random_state: Optional[int] = None,
lazy: bool = False,
inplace: bool = False,
):
"""Alias for :func:`DataFrameSchema.validate` method.
:param pd.DataFrame dataframe: the dataframe to be validated.
:param head: validate the first n rows. Rows overlapping with `tail` or
`sample` are de-duplicated.
:type head: int
:param tail: validate the last n rows. Rows overlapping with `head` or
`sample` are de-duplicated.
:type tail: int
:param sample: validate a random sample of n rows. Rows overlapping
with `head` or `tail` are de-duplicated.
:param random_state: random seed for the ``sample`` argument.
:param lazy: if True, lazily evaluates dataframe against all validation
checks and raises a ``SchemaErrors``. Otherwise, raise
``SchemaError`` as soon as one occurs.
:param inplace: if True, applies coercion to the object of validation,
otherwise creates a copy of the data.
"""
return self.validate(
dataframe, head, tail, sample, random_state, lazy, inplace
)
def __repr__(self) -> str:
"""Represent string for logging."""
return (
f"<Schema {self.__class__.__name__}("
f"columns={self.columns}, "
f"checks={self.checks}, "
f"index={self.index.__repr__()}, "
f"coerce={self.coerce}, "
f"dtype={self._dtype}, "
f"strict={self.strict}, "
f"name={self.name}, "
f"ordered={self.ordered}, "
f"unique_column_names={self.unique_column_names}"
")>"
)
def __str__(self) -> str:
"""Represent string for user inspection."""
def _format_multiline(json_str, arg):
return "\n".join(
f"{indent}{line}" if i != 0 else f"{indent}{arg}={line}"
for i, line in enumerate(json_str.split("\n"))
)
indent = " " * N_INDENT_SPACES
if self.columns:
columns_str = f"{indent}columns={{\n"
for colname, col in self.columns.items():
columns_str += f"{indent * 2}'{colname}': {col}\n"
columns_str += f"{indent}}}"
else:
columns_str = f"{indent}columns={{}}"
if self.checks:
checks_str = f"{indent}checks=[\n"
for check in self.checks:
checks_str += f"{indent * 2}{check}\n"
checks_str += f"{indent}]"
else:
checks_str = f"{indent}checks=[]"
# add additional indents
index_ = str(self.index).split("\n")
if len(index_) == 1:
index = str(self.index)
else:
index = "\n".join(
x if i == 0 else f"{indent}{x}" for i, x in enumerate(index_)
)
return (
f"<Schema {self.__class__.__name__}(\n"
f"{columns_str},\n"
f"{checks_str},\n"
f"{indent}coerce={self.coerce},\n"
f"{indent}dtype={self._dtype},\n"
f"{indent}index={index},\n"
f"{indent}strict={self.strict}\n"
f"{indent}name={self.name},\n"
f"{indent}ordered={self.ordered},\n"
f"{indent}unique_column_names={self.unique_column_names}\n"
")>"
)
def __eq__(self, other: object) -> bool:
if not isinstance(other, type(self)):
return NotImplemented
def _compare_dict(obj):
return {
k: v for k, v in obj.__dict__.items() if k != "_IS_INFERRED"
}
return _compare_dict(self) == _compare_dict(other)
@st.strategy_import_error
def strategy(
self, *, size: Optional[int] = None, n_regex_columns: int = 1
):
"""Create a ``hypothesis`` strategy for generating a DataFrame.
:param size: number of elements to generate
:param n_regex_columns: number of regex columns to generate.
:returns: a strategy that generates pandas DataFrame objects.
"""
return st.dataframe_strategy(
self.dtype,
columns=self.columns,
checks=self.checks,
unique=self.unique,
index=self.index,
size=size,
n_regex_columns=n_regex_columns,
)
def example(
self, size: Optional[int] = None, n_regex_columns: int = 1
) -> pd.DataFrame:
"""Generate an example of a particular size.
:param size: number of elements in the generated DataFrame.
:returns: pandas DataFrame object.
"""
# pylint: disable=import-outside-toplevel,cyclic-import,import-error
import hypothesis
with warnings.catch_warnings():
warnings.simplefilter(
"ignore",
category=hypothesis.errors.NonInteractiveExampleWarning,
)
return self.strategy(
size=size, n_regex_columns=n_regex_columns
).example()
@_inferred_schema_guard
def add_columns(self, extra_schema_cols: Dict[str, Any]) -> Self:
"""Create a copy of the :class:`DataFrameSchema` with extra columns.
:param extra_schema_cols: Additional columns of the format
:type extra_schema_cols: DataFrameSchema
:returns: a new :class:`DataFrameSchema` with the extra_schema_cols
added.
:example:
To add columns to the schema, pass a dictionary with column name and
``Column`` instance key-value pairs.
>>> import pandera as pa
>>>
>>> example_schema = pa.DataFrameSchema(
... {
... "category": pa.Column(str),
... "probability": pa.Column(float),
... }
... )
>>> print(
... example_schema.add_columns({"even_number": pa.Column(pa.Bool)})
... )
<Schema DataFrameSchema(
columns={
'category': <Schema Column(name=category, type=DataType(str))>
'probability': <Schema Column(name=probability, type=DataType(float64))>
'even_number': <Schema Column(name=even_number, type=DataType(bool))>
},
checks=[],
coerce=False,
dtype=None,
index=None,
strict=False
name=None,
ordered=False,
unique_column_names=False
)>
.. seealso:: :func:`remove_columns`
"""
schema_copy = copy.deepcopy(self)
schema_copy.columns = {
**schema_copy.columns,
**self.__class__(extra_schema_cols).columns,
}
return schema_copy
@_inferred_schema_guard