These are scripts to ensure the reproducibility of the results shown in the manuscript "Environmental drivers of a genomic transition zone in the ocean’s interior" by Daniel R, Mende†, Jessica A. Bryant †, Frank O. Aylward†, John M. Eppley, Torben Nielsen, David M. Karl, Edward F. DeLong*
getMetadataTable_HOTDOGS_densityLink.py and interpolateMetadata.py are used to link DNA-casts to data from HOT-DOGS.
The remaining scripts are R scripts: readme_figure1_4.txt: Results shown in Figure 1A,B,D readme_rarefaction.txt: Richness analysis shown in Fig1E
readme_N_metabolism_plots.txt: produce subplots for Extended Data Figures 9 and 10
1_mOTU_WGCNA_Network.R: WCGNA network analysis shown in Figure 3.