Use std::abs instead of abs to avoid some warnings on gcc13. #321
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| name: build | |
| on: | |
| push: | |
| branches: | |
| - '*' | |
| jobs: | |
| ubuntu-22-04: | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| - uses: actions/checkout@master | |
| - name: Install-prerequisites | |
| run: sudo ./scripts/InstallPrerequisites-Ubuntu.sh | |
| - name: Build-ubuntu-22.04 | |
| run: | | |
| lsb_release -a | |
| tar -cvf shasta-docs.tar --transform='s/docs/shastaDocs/' docs | |
| mkdir shasta-build | |
| cd shasta-build | |
| cmake .. -DBUILD_ID="Shasta unreleased test build newer than release 0.12.0 at commit "$GITHUB_SHA | |
| # cmake .. -DBUILD_ID="Shasta Release 0.12.0" | |
| make -j 2 all | |
| make install/strip | |
| mv shasta-install shasta-Ubuntu-22.04 | |
| tar -cvf shasta-Ubuntu-22.04.tar shasta-Ubuntu-22.04 | |
| - name: Test-ubuntu-22.04 | |
| run: | | |
| sudo apt install gzip | |
| gunzip tests/TinyTest.fasta.gz | |
| shasta-build/shasta-Ubuntu-22.04/bin/shasta --config Nanopore-Sep2020 --input tests/TinyTest.fasta | |
| ls -l ShastaRun/Assembly.fasta | |
| - uses: actions/upload-artifact@master | |
| with: | |
| name: shasta-docs.tar | |
| path: shasta-docs.tar | |
| - uses: actions/upload-artifact@master | |
| with: | |
| name: shasta-Linux | |
| path: shasta-build/shasta-Ubuntu-22.04/bin/shasta | |
| - uses: actions/upload-artifact@master | |
| with: | |
| name: shasta-Ubuntu-22.04.tar | |
| path: shasta-build/shasta-Ubuntu-22.04.tar | |
| ubuntu-22-04-minimal: | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| - uses: actions/checkout@master | |
| - name: Install-prerequisites (minimal) | |
| run: sudo ./scripts/InstallPrerequisites-Ubuntu.sh --minimal | |
| - name: Build-ubuntu-22.04 (minimal) | |
| run: | | |
| lsb_release -a | |
| mkdir shasta-build | |
| cd shasta-build | |
| cmake .. -DBUILD_DYNAMIC_EXECUTABLE=OFF -DBUILD_DYNAMIC_LIBRARY=OFF -DBUILD_ID="Shasta unreleased test build newer than release 0.12.0 at commit "$GITHUB_SHA | |
| # cmake .. -DBUILD_DYNAMIC_EXECUTABLE=OFF -DBUILD_DYNAMIC_LIBRARY=OFF -DBUILD_ID="Shasta Release 0.12.0 minimal build" | |
| make -j 2 all | |
| make install/strip | |
| mv shasta-install shasta-Ubuntu-22.04 | |
| tar -cvf shasta-Ubuntu-22.04.tar shasta-Ubuntu-22.04 | |
| - name: Test-ubuntu-22.04 | |
| run: | | |
| sudo apt install gzip | |
| gunzip tests/TinyTest.fasta.gz | |
| shasta-build/shasta-Ubuntu-22.04/bin/shasta --config Nanopore-Sep2020 --input tests/TinyTest.fasta --Reads.noCache | |
| ls -l ShastaRun/Assembly.fasta | |