🔧 create workir if it doesn't exist

papaemmelab · May 10, 2024 · 8948c52 · 8948c52
1 parent 2afa800
commit 8948c52
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/toil_container/containers.py b/toil_container/containers.py
@@ -84,6 +84,8 @@ def singularity_call(
     # ensure singularity doesn't overwrite $HOME by pointing to dummy dir
     # /tmp will be mapped to work_dir/scratch/tmp and removed after the call
     home_dir = ".unused_home"
+    if not os.path.exists(working_dir):
+        os.makedirs(working_dir)
     work_dir = mkdtemp(prefix=_TMP_PREFIX, dir=working_dir)
     singularity_args = [
         "--home",