vcf-search is a graphical tool designed to simplify the process of searching and exploring VCF (Variant Call Format) files. It provides a user-friendly interface, allowing users to configure search parameters and preview results without the need for command-line interactions.
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Graphical User Interface (GUI): No command-line required. Simply run the tool and interact with it through an intuitive graphical interface.
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File Selection: Upon launching, the tool prompts users to select a VCF file using a file browser.
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Parameter Configuration: Configure search parameters using a block-based interface. Specify columns, operators, values, and whether null values are permitted. Add as many or few parameters as needed (minimum of one).
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Search: Initiate the search with the configured parameters. The tool performs the search and provides a preview of the first 100 rows matching the criteria.
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Results Preview: View a window displaying the first 100 rows of the search results.
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File Browsing: After completion, users can choose to start a new search by browsing for another file.
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Save Output: Option to save the search results.
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Run the Tool:
- Execute the tool, and a file browser will appear.
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File Selection:
- Choose a VCF file through the file browser.
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Parameter Configuration:
- Configure search parameters, specifying columns, operators, values, and null value permissions.
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Search:
- Initiate the search to retrieve matching rows.
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Results Preview:
- View a preview window showing the first 100 rows of the search results.
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Options:
- Choose to browse for another file or save the output.
vcf-search is a 100% Python tool. It can be compiled into an executable for easy distribution. Ensure all necessary packages are installed, then follow the steps below:
# Install dependencies
pip install pyinstaller
# Compile into an executable
pyinstaller -F app.py
# Run the executable
./dist/appvcf-search is open-source software licensed under the MIT License. See the LICENSE file for details.
MIT License