Support Python3.12 (#151)

* Support Python3.12

* small fix

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

.github/workflows/build.yml

@@ -10,12 +10,12 @@ jobs:
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        python-version: ['3.8', '3.11']
+        python-version: ['3.8', '3.12']
 
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
       - name: Set up Python ${{ matrix.python-version }}
-        uses: actions/setup-python@v4
+        uses: actions/setup-python@v5
         with:
           python-version: ${{ matrix.python-version }}
       - name: Install dependencies

pyproject.toml

@@ -25,6 +25,7 @@ classifiers = [
     "Programming Language :: Python :: 3.9",
     "Programming Language :: Python :: 3.10",
     "Programming Language :: Python :: 3.11",
+    "Programming Language :: Python :: 3.12",
     "Topic :: Scientific/Engineering",
     "Topic :: Scientific/Engineering :: Bio-Informatics",
     "Topic :: Scientific/Engineering :: Medical Science Apps.",
@@ -45,9 +46,9 @@ dynamic = ["version"]
 
 [project.optional-dependencies]
 dev = [
-    "black==23.3.0",
-    "flake8==6.0.0",
-    "isort==5.12.0",
+    "black",
+    "flake8",
+    "isort",
     "pre-commit",
     "pytest",
 ]

tests/test_breast_cancer.py

@@ -153,7 +153,7 @@ def test_patient_model_simulations(
     start = time.time()
     assert simulations.run() is None
     elapsed = time.time() - start
-    print(f"Computation time for simulating {len(TNBC_ID)} patients: {elapsed/60:.1f} [min]")
+    print(f"Computation time for simulating {len(TNBC_ID)} patients: {elapsed / 60:.1f} [min]")
     if exec_model:
         # Extract response characteristics and visualize patient classification
         if dynamical_features is None: