Fix issue 608

[raoulcollenteur]

Short Description

Start using MySt_NB and fix issue #608 with Pandas DataFrames not displaying well.

Checklist before PR can be merged:

• closes issue [BUG] Pandas DataFrames not shown properly in RTD #608
• Format code with Black formatting
• tests added / passed

[codacy-production]

Coverage summary from Codacy

Merging #615 (ad0bf37) into dev (6a1bc90) - See PR on Codacy

Coverage variation	Diff coverage
❌ -0.07% (target: +0.00%)	∅

Coverage variation details

	Coverable lines	Covered lines	Coverage
Common ancestor commit (6a1bc90)	4965	3599	72.49%
Head commit (ad0bf37)	5105 (+140)	3697 (+98)	72.42% (-0.07%)

Coverage variation is the difference between the coverage for the head and common ancestor commits of the pull request branch: <coverage of head commit> - <coverage of common ancestor commit>

Diff coverage details

	Coverable lines	Covered lines	Diff coverage
Pull request (#615)	0	0	∅ (not applicable)

Diff coverage is the percentage of lines that are covered by tests out of the coverable lines that the pull request added or modified: <covered lines added or modified>/<coverable lines added or modified> * 100%

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[raoulcollenteur]

Using MyST_nb fixes the pandas data frame issue #608: https://pastas--615.org.readthedocs.build/en/615/examples/basic_model.html

But introduced a new one, now the links that @martinvonk made on the examples index page don't work, but in the sidebar they do. @martinvonk can you fix that?

[martinvonk]

Using MyST_nb fixes the pandas data frame issue #608: https://pastas--615.org.readthedocs.build/en/615/examples/basic_model.html

But introduced a new one, now the links that @martinvonk made on the examples index page don't work, but in the sidebar they do. @martinvonk can you fix that?

Links now standard refer to: https://blabla/file.html instead of https://blabla/file.ipynb. So apparently notebooks don't exist anymore, only html pages.

[raoulcollenteur]

Using MyST_nb fixes the pandas data frame issue #608: https://pastas--615.org.readthedocs.build/en/615/examples/basic_model.html
But introduced a new one, now the links that @martinvonk made on the examples index page don't work, but in the sidebar they do. @martinvonk can you fix that?

Links now standard refer to: https://blabla/file.html instead of https://blabla/file.ipynb. So apparently notebooks don't exist anymore, only html pages.

Cool I fixed it. Merging.