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Issue 98 #199

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merged 14 commits into from
Nov 12, 2018
Merged

Issue 98 #199

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506e81d
added new term PATO_0040007, shell shaped. closes #194
nicolevasilevsky Nov 12, 2018
1961b8a
added new term PATO_0040008, fringed. closes #193
nicolevasilevsky Nov 12, 2018
1223216
added new term PATO_0040009,bowl shaped . closes #192
nicolevasilevsky Nov 12, 2018
caced1b
added new terms PATO_0040011 and PATO_0040010, immobile relative to a…
nicolevasilevsky Nov 12, 2018
d90de6c
added new terms PATO_0040012, plug like. closes #189
nicolevasilevsky Nov 12, 2018
28b51b3
added synonym to PATO_0040012. addresses #189
nicolevasilevsky Nov 12, 2018
cb7b78a
added new term PATO_0040013, dorsomedial orientation. closes #188
nicolevasilevsky Nov 12, 2018
dd85bb9
added new term PATO_0040014, band-like. closes #186
nicolevasilevsky Nov 12, 2018
5c56ae6
added new term PATO_0040015, trough shaped. closes #185
nicolevasilevsky Nov 12, 2018
5c2a0ed
added new term PATO_0040016,pentagnonal. closes #184
nicolevasilevsky Nov 12, 2018
680d72e
changed attribution in dbxef for PATO_004003. Closes #181
nicolevasilevsky Nov 12, 2018
a3e09c4
added def to PATO_0001894. Closes #180
nicolevasilevsky Nov 12, 2018
8fa87d6
revised text def for PATO_0000261, maturity. Closes #179
nicolevasilevsky Nov 12, 2018
ab35608
added new term dysplastic growth, PATO_0040017. Closes #98
nicolevasilevsky Nov 12, 2018
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105 changes: 102 additions & 3 deletions src/ontology/pato-edit.obo
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Expand Up @@ -1514,7 +1514,7 @@ is_obsolete: true
[Term]
id: PATO:0000261
name: maturity
def: "A quality of a single physical entity which is held by a bearer when the latter exhibits complete growth, differentiation, or development." [Merriam-Webster:Merriam-Webster]
def: "A quality of a single physical entity which is held by a bearer when the latter exhibits a state of growth, differentiation, or development." [Merriam-Webster:Merriam-Webster]
subset: attribute_slim
is_a: PATO:0001995 ! organismal quality

Expand Down Expand Up @@ -13334,6 +13334,7 @@ relationship: is_opposite_of PATO:0001892 ! decreased odor
[Term]
id: PATO:0001894
name: phenotypic sex
def: "An organismal quality inhering in a bearer by virtue of the bearer's physical expression of sexual characteristics." []
subset: attribute_slim
is_a: PATO:0000047 ! biological sex

Expand Down Expand Up @@ -14313,7 +14314,6 @@ id: PATO:0002019
name: aplastic growth
def: "A growth quality of occurrent in which the growth of an organism, structure or group of organisms does not occur." [PATOC:MAH]
synonym: "agenesis" NARROW []
synonym: "dysgenesis" NARROW []
is_a: PATO:0001433 ! growth quality of occurrent

[Term]
Expand Down Expand Up @@ -20213,7 +20213,7 @@ property_value: http://purl.org/dc/elements/1.1/date 2018-05-24T04:10:53Z xsd:da
[Term]
id: PATO:0040003
name: pathogenicity
def: "The ability of a pathogen to produce an infectious disease or disorder in an another organism." [https://orcid.org/0000-0001-6330-7526]
def: "The ability of a pathogen to produce an infectious disease or disorder in an another organism." [https://orcid.org/0000-0001-8941-3984]
is_a: PATO:0001995 ! organismal quality
property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432
property_value: http://purl.org/dc/elements/1.1/date 2018-08-02T04:24:52Z xsd:dateTime
Expand All @@ -20234,6 +20234,105 @@ is_a: PATO:0000052 ! shape
property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432
property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:09:59Z xsd:dateTime

[Term]
id: PATO:0040007
name: shell shaped
def: "A shape quality inhering in a bearer by virtue of the bearer's having a shape like a shell." [https://orcid.org/0000-0003-3162-7490]
is_a: PATO:0000052 ! shape
property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432
property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:12:47Z xsd:dateTime

[Term]
id: PATO:0040008
name: fringed
def: "A shape quality inhering in a bearer by virtue of the bearer's having an ornamental border consisting of short straight or twisted threads or strips hanging from cut or raveled edges or from a separate band." [https://orcid.org/0000-0003-3162-7490, https://www.merriam-webster.com/dictionary/fringe]
is_a: PATO:0002267 ! edge shape
property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432
property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:15:10Z xsd:dateTime

[Term]
id: PATO:0040009
name: bowl shaped
def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of a bowl." [https://orcid.org/0000-0003-3162-7490]
is_a: PATO:0002008 ! concave 3-D shape
property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432
property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:17:01Z xsd:dateTime

[Term]
id: PATO:0040010
name: mobile relative to
def: "Mobility relative to a second entity." [https://orcid.org/0000-0003-3162-7490]
comment: For example, distinct anteroposterior mobility of palatine relative to mesethmoid.
is_a: PATO:0000004 ! mobility
property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432
property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:20:08Z xsd:dateTime

[Term]
id: PATO:0040011
name: immobile relative to
def: "Immobility relative to a second entity." [https://orcid.org/0000-0003-3162-7490]
comment: For example: distinct anteroposterior immobility of palatine relative to mesethmoid.
is_a: PATO:0000004 ! mobility
property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432
property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:21:07Z xsd:dateTime

[Term]
id: PATO:0040012
name: plug like
def: "A shape that is in the form of a plug, being tube-like and expanded on one end." [https://orcid.org/0000-0003-3162-7490]
synonym: "plug shaped" EXACT []
is_a: PATO:0000052 ! shape
property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432
property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:24:41Z xsd:dateTime

[Term]
id: PATO:0040013
name: dorsomedial orientation
def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed dorsomedially." [https://orcid.org/0000-0003-3162-7490]
synonym: "dorsomedially directed" EXACT []
is_a: PATO:0000133 ! orientation
property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432
property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:27:57Z xsd:dateTime

[Term]
id: PATO:0040014
name: band-like
def: "A shape that is in the form of a narrow strip encircling an object." [https://orcid.org/0000-0003-3162-7490, https://www.merriam-webster.com/dictionary/band]
synonym: "band like" EXACT []
synonym: "strip like" EXACT []
synonym: "strip-like" EXACT []
is_a: PATO:0000052 ! shape
property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432
property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:31:51Z xsd:dateTime

[Term]
id: PATO:0040015
name: trough shaped
def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's shape resembling that of a trough, being narrow, long, and boxlike in shape." [http://www.dictionary.com/browse/trough, https://orcid.org/0000-0003-3162-7490]
synonym: "trough like" EXACT []
synonym: "trough-like" EXACT []
synonym: "trough-shaped" EXACT []
is_a: PATO:0002008 ! concave 3-D shape
property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432
property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:35:51Z xsd:dateTime

[Term]
id: PATO:0040016
name: pentagonal
def: "A shape quality inhering in a bearer by virtue of the bearer's having five angles and five sides." [https://orcid.org/0000-0003-3162-7490, https://www.merriam-webster.com/dictionary/pentagonal]
is_a: PATO:0002006 ! 2-D shape
property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432
property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:39:48Z xsd:dateTime

[Term]
id: PATO:0040017
name: dysplastic growth
def: "A growth quality of occurrent in which the growth of an organism, structure or group of organisms is abnormal." [https://www.cancer.gov/publications/dictionaries/cancer-terms/def/dysplasia]
synonym: "dysgenesis" NARROW []
is_a: PATO:0001433 ! growth quality of occurrent
property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432
property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T19:01:51Z xsd:dateTime

[Term]
id: PATO:0045000
name: normal rate
Expand Down