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1. iterative-centerline-tracing-sperm iterative-centerline-tracing-sperm Public

   code to trace the flagellum's center-line from human sperm using an iterative approach

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2. hdaf_filtering hdaf_filtering Public

   Python implementation of a low-pass filter based on Hermited Distributed Approximating Functionals (hdaf), which can be used to create additional filters such as high-pass, band-pass, laplacian and…

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3. deeptube_3d_centerline deeptube_3d_centerline Public

   Python code to trace single branch tubular structures where the algorithm consist of two main steps. In a first step, the algorithm uses a deep learning model to segment the tubular structures, and…

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4. LiPlaCeT LiPlaCeT Public

   LiPlaCeT plugin has been developed to facilitate cell tracking and cell lineage analysis within time-lapse experiments of 3D cell populations. Cell information, including 3D position through time, …

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5. unet_pytorch_2d unet_pytorch_2d Public

   User-friendly implementation of the U-Net architecture for segmenting objects in 2D images. The Jupyter notebook offers step-by-step instructions for training the model, including uploading data an…

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6. meson_matlab meson_matlab Public

   MultiscalE Segmentation Of Neurons

   MATLAB