MUMPS requires more memory

[paulflang]

I just pushed c7cf5f3 to the multi_exp branch. I think the new code should correctly translate the PEtab problem specified in Disfit/tests/fixtures/G2M_copasi to a Julia JuMP problem (see DisFit/julia_code.jl). Unfortunately, when running the optimization I seem to run out of memory. @sshin23 : do you have any suggestions of how to solve this?

******************************************************************************
This program contains Ipopt, a library for large-scale nonlinear optimization.
 Ipopt is released as open source code under the Eclipse Public License (EPL).
         For more information visit http://projects.coin-or.org/Ipopt
******************************************************************************

This is Ipopt version 3.12.10, running with linear solver mumps.
NOTE: Other linear solvers might be more efficient (see Ipopt documentation).

Number of nonzeros in equality constraint Jacobian...:   288116
Number of nonzeros in inequality constraint Jacobian.:       16
Number of nonzeros in Lagrangian Hessian.............:   415260

MUMPS returned INFO(1) = -9 and requires more memory, reallocating.  Attempt 1
  Increasing icntl[13] from 1000 to 2000.
MUMPS returned INFO(1) = -9 and requires more memory, reallocating.  Attempt 2
  Increasing icntl[13] from 2000 to 4000.

[sshin23]

Made necessary changes in jump_script.jl in a1869ba. Could you make the corresponding changes in core.py?

Also, it would be helpful to include a bash or python script for this example.

[paulflang]

Thanks a lot. I'll make the changes to core.py.

Also, it would be helpful to include a bash or python script for this example.

Do you mean a script to run the translation of PEtab to JuMP?

[sshin23]

Hi Paul, Also, it would be helpful to include a bash or python script for this example. Yes. Sorry if it was already in the repo and I wasn't finding it. Thanks, Sungho

…

On Tue, Jun 9, 2020 at 6:25 PM paulflang ***@***.***> wrote: Thanks a lot. I'll make the changes to core.py. Also, it would be helpful to include a bash or python script for this example. Do you mean a script to run the translation of PEtab to JuMP? — You are receiving this because you were assigned. Reply to this email directly, view it on GitHub <#5 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AG62JSHGSLCI7HC3XV6CTCTRV3AF7ANCNFSM4NSANILQ> .