DOC: Spelling errors

Using codespell to check for spelling errors on comments.

Change-Id: Id3c7e92f4b35b725cdd5e746628b2a74673f8a53
STYLE: Tests failing style

Modules/Core/Common/include/itkArray.h

@@ -135,9 +135,9 @@ class Array:public vnl_vector< TValueType >
   void SetData(TValueType *data, bool LetArrayManageMemory = false);
 
   /** Similar to the previous method. In the above method, the size must be
-   * seperately set prior to using user-supplied data. This introduces an
+   * separately set prior to using user-supplied data. This introduces an
    * unnecessary allocation step to be performed. This method avoids it
-   * and should be used to import data whereever possible to avoid this.
+   * and should be used to import data wherever possible to avoid this.
    * Set the pointer from which the data is imported.
    * If "LetArrayManageMemory" is false, then the application retains
    * the responsibility of freeing the memory for this data.  If

Modules/Core/Common/include/itkArray.hxx

@@ -101,9 +101,9 @@ Array< TValueType >
 }
 
 /** Similar to the previous method. In the above method, the size must be
- * seperately set prior to using user-supplied data. This introduces an
+ * separately set prior to using user-supplied data. This introduces an
  * unnecessary allocation step to be performed. This method avoids it
- * and should be used to import data whereever possible to avoid this.
+ * and should be used to import data wherever possible to avoid this.
  * Set the pointer from which the data is imported.
  * If "LetArrayManageMemory" is false, then the application retains
  * the responsibility of freeing the memory for this data.  If

Modules/Core/Common/include/itkBSplineInterpolationWeightFunction.hxx

@@ -84,7 +84,7 @@ BSplineInterpolationWeightFunction< TCoordRep, VSpaceDimension, VSplineOrder >
   os << indent << "SupportSize: " << m_SupportSize << std::endl;
 }
 
-/** Compute weights for interpolation at continous index position */
+/** Compute weights for interpolation at continuous index position */
 template< class TCoordRep, unsigned int VSpaceDimension,
           unsigned int VSplineOrder >
 typename BSplineInterpolationWeightFunction< TCoordRep, VSpaceDimension,
@@ -102,7 +102,7 @@ BSplineInterpolationWeightFunction< TCoordRep, VSpaceDimension, VSplineOrder >
   return weights;
 }
 
-/** Compute weights for interpolation at continous index position */
+/** Compute weights for interpolation at continuous index position */
 template< class TCoordRep, unsigned int VSpaceDimension,
           unsigned int VSplineOrder >
 void BSplineInterpolationWeightFunction< TCoordRep, VSpaceDimension,

Modules/Core/Common/include/itkColorTable.h

@@ -54,7 +54,7 @@ class ITK_EXPORT ColorTable:public Object
 
   /** Generate a lookup table of 8 discrete colors. The colors are Red,
     * Purple, Aqua, Yellow, Green, Blue, Grey0.70, White. For integral
-    * pixel types, the color range is bewteen NonpositiveMin() and max(). For
+    * pixel types, the color range is between NonpositiveMin() and max(). For
     * continuous types, the range is 0.0 to 1.0.
     */
   void    UseDiscreteColors(void);
@@ -67,14 +67,14 @@ class ITK_EXPORT ColorTable:public Object
 
   /** Generate a lookup table of n values good for showing
     * "temperatures".  For integral pixel types, the color range is
-    * bewteen NonpositiveMin() and max(). For continuous types, the
+    * between NonpositiveMin() and max(). For continuous types, the
     * range is 0.0 to 1.0.
     */
   void    UseHeatColors(unsigned int n = 256);
 
   /** Generate a lookup table of n random values. For integral pixel
     * types, the color range is between NonpositiveMin() and
-    * max(). For continous types, the range is 0.0 to 1.0.
+    * max(). For continuous types, the range is 0.0 to 1.0.
     */
   void    UseRandomColors(unsigned int n = 256);
 

Modules/Core/Common/include/itkConstNeighborhoodIterator.h

@@ -430,7 +430,7 @@ class ITK_EXPORT ConstNeighborhoodIterator:
 protected:
 
   /** Default method for setting the coordinate location of the iterator.
-   * Loop indicies correspond to the actual Image region index. */
+   * Loop indices correspond to the actual Image region index. */
   virtual void SetLoop(const IndexType & p)
   {  m_Loop = p; m_IsInBoundsValid = false; }
 

Modules/Core/Common/include/itkConstNeighborhoodIterator.hxx

@@ -601,7 +601,7 @@ void ConstNeighborhoodIterator< TImage, TBoundaryCondition >
   SizeType               imageBRSize = m_ConstImage->GetBufferedRegion().GetSize();
 
   // Set the bounds and the wrapping offsets. Inner bounds are the loop
-  // indicies where the iterator will begin to overlap the edge of the image
+  // indices where the iterator will begin to overlap the edge of the image
   // buffered region.
   for ( DimensionValueType i = 0; i < Dimension; ++i )
     {

Modules/Core/Common/include/itkConstShapedNeighborhoodIterator.h

@@ -306,11 +306,11 @@ class ITK_EXPORT ConstShapedNeighborhoodIterator:
     m_CenterIsActive = false;
   }
 
-  /** Returns the list of active indicies in the neighborhood */
+  /** Returns the list of active indices in the neighborhood */
   const IndexListType & GetActiveIndexList() const
   { return m_ActiveIndexList; }
 
-  /** Returns the size of the list of active neighborhood indicies. */
+  /** Returns the size of the list of active neighborhood indices. */
   typename IndexListType::size_type GetActiveIndexListSize() const
   { return m_ActiveIndexList.size(); }
 

Modules/Core/Common/include/itkConstSliceIterator.h

@@ -39,7 +39,7 @@ namespace itk
  * container's operator[] method.
  *
  * References:
- * Modeled after a slice iterator proposed by Bjarne Stroustrup
+ * Modelled after a slice iterator proposed by Bjarne Stroustrup
  * in C++ Programming Language, Third Edition. Bjarne Stroustrup.  Addison
  * Wesley, Reading, MA. 1997.
  *

Modules/Core/Common/include/itkContinuousIndex.h

@@ -30,7 +30,7 @@ namespace itk
  * (components).
  * The template parameter TCoordRep can be any data type that behaves
  * like a primitive (or atomic) data type (int, short, float, complex).
- * The VIndexDimension defines the number of  components in the continous
+ * The VIndexDimension defines the number of  components in the continuous
  * index array.
  *
  * \sa Point

Modules/Core/Common/include/itkDataObject.h

@@ -237,7 +237,7 @@ class ITKCommon_EXPORT InvalidRequestedRegionError:public DataObjectError
  * filter needs to re-execute in order to satisfy a given request. For
  * DataObjects that do not support Regions, this method always returns
  * false. By always returning false, these types of DataObjects will
- * update solely on the basis of modified times (wherease Images
+ * update solely on the basis of modified times (whereas Images
  * update based on either modified times or the RequestedRegion
  * needs). If this method always returned true, the DataObject would
  * be updated on every single call to Update() (not recommended).

Modules/Core/Common/include/itkDefaultConvertPixelTraits.h

@@ -28,7 +28,7 @@ namespace itk
 /** \class DefaultConvertPixelTraits
  *  \brief Traits class used to by ConvertPixels to convert blocks of pixels.
  *
- *  TOutputPixelType is the destination type. The input type is infered
+ *  TOutputPixelType is the destination type. The input type is inferred
  *  by the templated static function Convert.
  *
  *  This implementaion, does a simple assignment operator, so if you are

Modules/Core/Common/include/itkDefaultPixelAccessor.h

@@ -28,7 +28,7 @@ namespace itk
  *
  * DefaultPixelAccessor is templated over an internal type and an
  * external type representation. This class encapsulates a
- * customized convertion between the internal and external
+ * customized conversion between the internal and external
  * type representations.
  *
  * PixelAccessor is the class responsible for pixel-to-pixel

Modules/Core/Common/include/itkDynamicLoader.h

@@ -61,7 +61,7 @@ class ITKCommon_EXPORT DynamicLoader:public Object
   static LibHandle OpenLibrary(const char *);
 
   /** Attempt to detach a dynamic library from the
-   * process.  A value of true is returned if it is sucessful. */
+   * process.  A value of true is returned if it is successful. */
   static int CloseLibrary(LibHandle);
 
   /** Find the address of the symbol in the given library. */

Modules/Core/Common/include/itkEventObject.h

@@ -44,7 +44,7 @@ namespace itk
  * as a consequence of changes occurring in state on some itk::Objects.
  *
  * itk::EventObject carries information in its own type, it relies on the
- * appropiate use of the RTTI (Run Time Type Information).
+ * appropriate use of the RTTI (Run Time Type Information).
  *
  * A set of standard EventObjects is defined near the end of itkEventObject.h.
  *

Modules/Core/Common/include/itkExtractImageFilter.h

@@ -150,7 +150,7 @@ class ITK_EXPORT ExtractImageFilter:
    * else throw an exception.  Use this strategy when it is known
    * that properly identified physical space sub-volumes can be
    * reliably extracted from a higher dimensional space.  For
-   * example when the applicaiton programmer knows that a 4D image
+   * example when the application programmer knows that a 4D image
    * is 3D+time, and that the 3D sub-space is properly defined.
    */
   void SetDirectionCollapseToStrategy(const DIRECTIONCOLLAPSESTRATEGY choosenStrategy)
@@ -163,7 +163,7 @@ class ITK_EXPORT ExtractImageFilter:
       break;
     case DIRECTIONCOLLAPSETOUNKOWN:
     default:
-      itkExceptionMacro( << "Invalid Strategy Choosen for itk::ExtractImageFilter" );
+      itkExceptionMacro( << "Invalid Strategy Chosen for itk::ExtractImageFilter" );
       }
 
     this->m_DirectionCollapseStrategy=choosenStrategy;

Modules/Core/Common/include/itkImage.h

@@ -36,7 +36,7 @@ namespace itk
  * variables), and a dimension (number of independent variables).  The
  * container for the pixel data is the ImportImageContainer.
  *
- * Within the pixel container, images are modeled as arrays, defined by a
+ * Within the pixel container, images are modelled as arrays, defined by a
  * start index and a size.
  *
  * There are three sets of meta-data describing an image. These are "Region"

Modules/Core/Common/include/itkImageAlgorithm.h

@@ -25,7 +25,7 @@ namespace itk
  * \brief A container of static functions which can operate on Images
  * with Iterators
  *
- * These methods are modeled after the STL algorithm. They may use
+ * These methods are modelled after the STL algorithm. They may use
  * special optimization techniques to implement enhanced versions of
  * the method.
  *

Modules/Core/Common/include/itkImageBase.h

@@ -434,7 +434,7 @@ class ITK_EXPORT ImageBase:public DataObject
   }
 
   /** Get a physical point (in the space which
-   * the origin and spacing infomation comes from)
+   * the origin and spacing information comes from)
    * from a continuous index (in the index space)
    * \sa Transform */
   template< class TCoordRep >
@@ -454,7 +454,7 @@ class ITK_EXPORT ImageBase:public DataObject
   }
 
   /** Get a physical point (in the space which
-   * the origin and spacing infomation comes from)
+   * the origin and spacing information comes from)
    * from a discrete index (in the index space)
    *
    * \sa Transform */
@@ -485,7 +485,7 @@ class ITK_EXPORT ImageBase:public DataObject
   }
 
   /** Get a physical point (in the space which
-   * the origin and spacing infomation comes from)
+   * the origin and spacing information comes from)
    * from a discrete index (in the index space)
    *
    * \sa Transform */

Modules/Core/Common/include/itkImageRegionMultidimensionalSplitter.hxx

@@ -158,7 +158,7 @@ ImageRegionMultidimensionalSplitter< VImageDimension >
         }
       }
 
-    // calculate the number of addtional pieces this split would add
+    // calculate the number of additional pieces this split would add
     unsigned int additionalNumPieces = 1;
     for ( i = 0; i < VImageDimension; ++i )
       {

Modules/Core/Common/include/itkImageToImageFilter.h

@@ -180,7 +180,7 @@ class ITK_EXPORT ImageToImageFilter:public ImageSource< TOutputImage >
    * have to override this method.  In doing so, it should call its
    * superclass' implementation as its first step. Note that imaging
    * filters operate differently than the classes to this point in the
-   * class hierachy.  Up till now, the base assumption has been that
+   * class hierarchy.  Up till now, the base assumption has been that
    * the largest possible region will be requested of the input.
    *
    * This implementation of GenerateInputRequestedRegion() only

Modules/Core/Common/include/itkIntTypes.h

@@ -40,7 +40,7 @@ namespace itk
 #if defined( ITK_HAVE_STDINT_H )
 
 // Note: these types are technically optional in C99 stdint.h file. As
-// such a try complile for their existance may be needed.
+// such a try complile for their existence may be needed.
 typedef::int8_t   int8_t;
 typedef::uint8_t  uint8_t;
 typedef::int16_t  int16_t;
@@ -78,7 +78,7 @@ typedef::uintptr_t uintptr_t;
 
 #else // ITK_HAVE_STDINT_H
 
-/** Fixed width interger types. */
+/** Fixed width integer types. */
 typedef::itksysFundamentalType_Int8   int8_t;
 typedef::itksysFundamentalType_UInt8  uint8_t;
 typedef::itksysFundamentalType_Int16  int16_t;
@@ -88,7 +88,7 @@ typedef::itksysFundamentalType_UInt32 uint32_t;
 typedef::itksysFundamentalType_Int64  int64_t;
 typedef::itksysFundamentalType_UInt64 uint64_t;
 
-/** Types which are at least a certain size, these are prefered over
+/** Types which are at least a certain size, these are preferred over
  *  fixed width. */
 typedef int8_t   int_least8_t;
 typedef uint8_t  uint_least8_t;
@@ -100,7 +100,7 @@ typedef int64_t  int_least64_t;
 typedef uint64_t uint_least64_t;
 
 /** Types which are at least a certain size but may be greater if
- *  performace benifits, these are prefered over fixed width. */
+ *  performace benefits, these are preferred over fixed width. */
 typedef int8_t   int_fast8_t;
 typedef uint8_t  uint_fast8_t;
 typedef int16_t  int_fast16_t;

Modules/Core/Common/include/itkMath.h

@@ -94,7 +94,7 @@ static const double sqrt1_2          = 0.70710678118654752440;
 
 /** \brief Round towards nearest integer
  *
- *  \tparam TReturn must be an interger type
+ *  \tparam TReturn must be an integer type
  *  \tparam TInput must be float or double
  *
  *          halfway cases are rounded towards the nearest even
@@ -115,7 +115,7 @@ itkTemplateFloatingToIntegerMacro(RoundHalfIntegerToEven);
 
 /** \brief Round towards nearest integer
  *
- *  \tparam TReturn must be an interger type
+ *  \tparam TReturn must be an integer type
  *  \tparam TInput must be float or double
  *
  *          halfway cases are rounded upward, e.g.
@@ -139,7 +139,7 @@ itkTemplateFloatingToIntegerMacro(RoundHalfIntegerUp);
 
 /** \brief Round towards nearest integer (This is a synonym for RoundHalfIntegerUp)
  *
- *  \tparam TReturn must be an interger type
+ *  \tparam TReturn must be an integer type
  *  \tparam TInput must be float or double
  *
  *  \sa RoundHalfIntegerUp<TReturn, TInput>()
@@ -188,7 +188,7 @@ inline TReturn CastWithRangeCheck(TInput x)
        && !( !itk::NumericTraits< TReturn >::is_signed &&  itk::NumericTraits< TInput >::is_signed ) )
     {
     // if the output type is bigger and we are not converting a signed
-    // interger to an unsigned interger then we have no problems
+    // integer to an unsigned integer then we have no problems
     return ret;
     }
   else if ( sizeof( TReturn ) >= sizeof( TInput ) )

Modules/Core/Common/include/itkMetaDataObject.h

@@ -60,7 +60,7 @@ namespace itk
  * to work around those deficiencies.
  *
  * The behavior of the MetaDataObject<Type>::Print() function has many plausible
- * application dependant implementations.  The default implementation prints the
+ * application dependent implementations.  The default implementation prints the
  * string "[UNKNOWN PRINT CHARACTERISTICS]" that works for all possible
  * MetaDataObject types.
  *

Modules/Core/Common/include/itkNeighborhoodIterator.h

@@ -160,7 +160,7 @@ namespace itk
  * increasing dimension (as defined by the layout of the image data) .  For
  * itk::Image this is the first dimension specified (i.e. for 3-dimensional
  * (x,y,z) NeighborhoodIterator proceeds along the x-dimension) (For random
- * access iteration through N-dimensional indicies, use
+ * access iteration through N-dimensional indices, use
  * RandomAccessNeighborhoodIterator.)
  *
  * Each subclass of a ConstNeighborhoodIterator may also define its own
@@ -169,7 +169,7 @@ namespace itk
  * internal loop variables and offsets to trigger wraps at itk::Image region
  * boundaries, and to identify the end of the itk::Image region.
  *
- * \todo Better support for regions with negative indicies.
+ * \todo Better support for regions with negative indices.
  * \todo Add Begin() and End() methods?
  *
  * \sa DerivativeOperator \sa NeighborhoodInnerProduct

Modules/Core/Common/include/itkNumericTraitsCovariantVectorPixel.h

@@ -173,7 +173,7 @@ class NumericTraits< CovariantVector< T, D > >
       }
   }
 
-  /** \note: the functions are prefered over the member variables as
+  /** \note: the functions are preferred over the member variables as
    * they are defined for all partial specialization
    */
   static const Self ITKCommon_EXPORT Zero;

Modules/Core/Common/include/itkNumericTraitsDiffusionTensor3DPixel.h

@@ -160,7 +160,7 @@ class NumericTraits< DiffusionTensor3D< T > >
       }
   }
 
-  /** \note: the functions are prefered over the member variables as
+  /** \note: the functions are preferred over the member variables as
    * they are defined for all partial specialization
    */
   static const Self ITKCommon_EXPORT Zero;

Modules/Core/Common/include/itkNumericTraitsFixedArrayPixel.h

@@ -173,7 +173,7 @@ class NumericTraits< FixedArray< T, D > >
       }
   }
 
-  /** \note: the functions are prefered over the member variables as
+  /** \note: the functions are preferred over the member variables as
    * they are defined for all partial specialization
    */
   static const Self ITKCommon_EXPORT Zero;

Modules/Core/Common/include/itkNumericTraitsPointPixel.h

@@ -160,7 +160,7 @@ class NumericTraits< Point< T , D > >
       }
   }
 
-  /** \note: the functions are prefered over the member variables as
+  /** \note: the functions are preferred over the member variables as
    * they are defined for all partial specialization
    */
   static const Self ITKCommon_EXPORT Zero;

Modules/Core/Common/include/itkNumericTraitsRGBAPixel.h

@@ -172,7 +172,7 @@ class NumericTraits< RGBAPixel< T > >
       }
   }
 
-  /** \note: the functions are prefered over the member variables as
+  /** \note: the functions are preferred over the member variables as
    * they are defined for all partial specialization
    */
   static const Self ITKCommon_EXPORT Zero;

Modules/Core/Common/include/itkNumericTraitsRGBPixel.h

@@ -172,7 +172,7 @@ class NumericTraits< RGBPixel< T > >
       }
   }
 
-  /** \note: the functions are prefered over the member variables as
+  /** \note: the functions are preferred over the member variables as
    * they are defined for all partial specialization
    */
   static const Self ITKCommon_EXPORT Zero;