201: Added check for scaninputs in non-reproduce branch (#202)

201: Added check for scaninputs in non-reproduce branch

payu/manifest.py

@@ -340,14 +340,22 @@ def setup(self):
 
             # Must make links as no files will be added to the manifest
             for mf in ['exe', 'restart', 'input']:
-                print(mf)
+                print('Making links: {}'.format(mf))
                 self.manifests[mf].make_links()
 
             for model in self.expt.models:
                 model.have_restart_manifest = True
+
         else:
             self.have_manifest['restart'] = False
 
+            if not self.scaninputs:
+                # If input directories not scanned then the only
+                # way to populate the inputs in work is to rely
+                # on input manifest
+                print('Making links from input manifest (scaninputs=False)')
+                self.manifests['input'].make_links()
+
     def check_manifests(self):
 
         print("Checking exe and input manifests")