Curare 0.6.0

Changed

• --cores option is now mandatory
• DESeq2 fold changes are now inversed, so that edgeR and DESeq2 results are comparable
• Count tables for DESeq2 get rounded, so --fraction of featureCounts will work with DESeq2

Added

• New modules
  • HISAT2
  • Differential gene expression with edgeR
• Curare wizard now supports download of RefSeq genomes and annotations
• STAR index and STAR mapping now have threads options. These can be used to control how many mappings can run in parallel
• DESeq2 and edgeR modules also visualize the gene body coverage (using RSeQC)

Fixed

• Fixed STAR index bug: Errors during STAR index building could lead to a state where Curare thought that the index was build properly
• A chromosome column was missing in DGE summary xlsx files