SARS-CoV-2 Tissue Modeling Coalition

Repositories

• pc4covid19

  PhysiCell for COVID19 simulator app for nanoHUB
  Python BSD-3-Clause 5 3 0 0 Updated Jan 21, 2021

• immune-response

  Immune system submodel
  C++ BSD-3-Clause 0 0 0 0 Updated Dec 14, 2020

• COVID19

  Rapid prototyping coalition for SARS-CoV-2 tissue infection dynamics. (integrated model)
  Jupyter Notebook BSD-3-Clause 10 7 0 0 Updated Nov 20, 2020

• single-cell-pyroptosis

  pyroptosis model (Sara and Fiona)
  C++ 1 0 0 0 Updated Oct 12, 2020

• tissue-damage-model

  tissue damage model-Ashlee Ford Versypt group
  C++ 1 0 0 0 Updated Oct 2, 2020

• systemic-immune-response
  C++ 2 0 0 0 Updated Sep 30, 2020

• viral-replication-model

  receptor trafficking and viral replication model - Jim Faeder group
  C++ 0 0 0 0 Updated Sep 3, 2020

• pharmacodynamics-submodel

  pharmacodynamics submodel for COVID19 project
  C++ BSD-3-Clause 0 0 0 0 Updated Aug 17, 2020

• pharmacodynamics2GUI

  nanoHUB GUI for pharmacodynamics submodel
  C++ BSD-3-Clause 0 0 0 0 Updated Jul 30, 2020

• preprints

  Current and archived preprints
  0 0 0 0 Updated Jul 28, 2020

• virion2response

  nanoHUB GUI: infected cell response: metabolic disruption, death and more
  C++ BSD-3-Clause 0 0 0 0 Updated Jun 3, 2020

• virion2replication

  nanoHUB GUI: virion replication dynamics
  C++ BSD-3-Clause 0 0 0 0 Updated Apr 13, 2020

• virion2receptor

  nanoHUB GUI: virus internalization (endocytosis), ACE2 receptor dynamics, export (exocytosis)
  C++ BSD-3-Clause 0 0 0 0 Updated Apr 13, 2020