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i use SnpSift annotate to add gnomad field with:
java -jar SnpSift.jar annotate -noId -tabix -info AF -name gnomad. gnomad.exomes.r2.1.1.gz InDels_only.vcf.gz > gnomad_InDels_only.vcf
but in the results i have rows with the field added and others rows with no field added, i want to add a default field when no match exist with gnomad database.
For example default field "gnomad.AF=0" added for input rows with no match.
thank you --
The text was updated successfully, but these errors were encountered:
--Hi all,
i use SnpSift annotate to add gnomad field with:
java -jar SnpSift.jar annotate -noId -tabix -info AF -name gnomad. gnomad.exomes.r2.1.1.gz InDels_only.vcf.gz > gnomad_InDels_only.vcf
but in the results i have rows with the field added and others rows with no field added, i want to add a default field when no match exist with gnomad database.
For example default field "gnomad.AF=0" added for input rows with no match.
thank you --
The text was updated successfully, but these errors were encountered: