pip install https://github.com/socialgene/antismash_gbk_to_table/archive/main.tar.gz
wget https://antismash-db.secondarymetabolites.org/output/GCF_004339725.1/GCF_004339725.1.zip
mkdir GCF_004339725
unzip -n -d GCF_004339725 GCF_004339725.1.zip
antismash_gbk_to_table --input ./GCF_004339725/*.region*.gbk --output GCF_004339725_table.tsv --header true
cat GCF_004339725_table.tsv
| locus | tool | type | start | end | strand | category | contig_edge | neighbouring | product | protocluster_number | candidate_cluster_number | candidate_cluster_numbers | region_number | kind |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NZ_SMGK01000001 | antismash | protocluster | 22733 | 45843 | 1 | False | LAP | 1 | ||||||
| NZ_SMGK01000001 | antismash | proto_core | 32733 | 35843 | 1 | LAP | 1 | |||||||
| NZ_SMGK01000001 | antismash | cand_cluster | 22733 | 45843 | 1 | False | LAP | 1 | single | |||||
| NZ_SMGK01000001 | antismash | region | 22733 | 45843 | 1 | False | LAP | 1 | 1 | |||||
| NZ_SMGK01000001 | antismash | cand_cluster | 558000 | 645023 | 1 | False | NRPS; T1PKS; NRPS-like | 1 | neighbouring | |||||
| NZ_SMGK01000001 | antismash | region | 558000 | 645023 | 1 | False | NRPS; T1PKS; NRPS-like | 1; 2; 3 | 2 | |||||
| NZ_SMGK01000001 | antismash | protocluster | 558000 | 610087 | 1 | False | NRPS | 1 | ||||||
| NZ_SMGK01000001 | antismash | proto_core | 578000 | 590087 | 1 | NRPS | 1 | |||||||
| NZ_SMGK01000001 | antismash | cand_cluster | 558000 | 610087 | 1 | False | NRPS; T1PKS | 2 | chemical_hybrid | |||||
| NZ_SMGK01000001 | antismash | protocluster | 559358 | 607310 | 1 | False | T1PKS | 2 | ||||||
| NZ_SMGK01000001 | antismash | proto_core | 579358 | 587310 | -1 | T1PKS | 2 | |||||||
| NZ_SMGK01000001 | antismash | protocluster | 603188 | 645023 | 1 | False | NRPS-like | 3 | ||||||
| NZ_SMGK01000001 | antismash | proto_core | 623188 | 625023 | 1 | NRPS-like | 3 | |||||||
| NZ_SMGK01000001 | antismash | cand_cluster | 603188 | 645023 | 1 | False | NRPS-like | 3 | single | |||||
| NZ_SMGK01000001 | antismash | cand_cluster | 1172805 | 1235383 | 1 | False | T3PKS; terpene | 1 | neighbouring | |||||
| NZ_SMGK01000001 | antismash | region | 1172805 | 1235383 | 1 | False | T3PKS; terpene | 1; 2; 3 | 3 | |||||
| NZ_SMGK01000001 | antismash | protocluster | 1172805 | 1213854 | 1 | False | T3PKS | 1 | ||||||
| NZ_SMGK01000001 | antismash | proto_core | 1192805 | 1193854 | 1 | T3PKS | 1 | |||||||
| NZ_SMGK01000001 | antismash | cand_cluster | 1172805 | 1213854 | 1 | False | T3PKS | 2 | single | |||||
| NZ_SMGK01000001 | antismash | protocluster | 1213380 | 1235383 | 1 | False | terpene | 2 | ||||||
| NZ_SMGK01000001 | antismash | proto_core | 1223380 | 1225383 | 1 | terpene | 2 | |||||||
| NZ_SMGK01000001 | antismash | cand_cluster | 1213380 | 1235383 | 1 | False | terpene | 3 | single | |||||
| NZ_SMGK01000002 | antismash | protocluster | 34229 | 76787 | 1 | False | NRPS-like | 1 | ||||||
| NZ_SMGK01000002 | antismash | proto_core | 54229 | 56787 | -1 | NRPS-like | 1 | |||||||
| NZ_SMGK01000002 | antismash | cand_cluster | 34229 | 76787 | 1 | False | NRPS-like | 1 | single | |||||
| NZ_SMGK01000002 | antismash | region | 34229 | 76787 | 1 | False | NRPS-like | 1 | 1 | |||||
| NZ_SMGK01000002 | antismash | protocluster | 640246 | 662158 | 1 | False | terpene | 1 | ||||||
| NZ_SMGK01000002 | antismash | proto_core | 650246 | 652158 | 1 | terpene | 1 | |||||||
| NZ_SMGK01000002 | antismash | cand_cluster | 640246 | 662158 | 1 | False | terpene | 1 | single | |||||
| NZ_SMGK01000002 | antismash | region | 640246 | 662158 | 1 | False | terpene | 1 | 2 | |||||
| NZ_SMGK01000008 | antismash | protocluster | 82608 | 93489 | 1 | False | bacteriocin | 1 | ||||||
| NZ_SMGK01000008 | antismash | proto_core | 87608 | 88489 | 1 | bacteriocin | 1 | |||||||
| NZ_SMGK01000008 | antismash | cand_cluster | 82608 | 93489 | 1 | False | bacteriocin | 1 | single | |||||
| NZ_SMGK01000008 | antismash | region | 82608 | 93489 | 1 | False | bacteriocin | 1 | 1 |