GitHub - pedromzadeh/predicting-organoid-morphogenesis-via-bayesian-inference: This repository contains code relevant to our collaboration with the Ewald group at Johns Hopkins Medical School. There's code that cleans, processes, and extracts features from fluorescent microscopy images. There's also the STAN inference models based on theoretical work from Camley et. al. There's also code for generating fake cell shapes from Fourier modes in order to validate the models.

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This repository contains code relevant to our collaboration with the Ewald group at Johns Hopkins Medical School. There's code that cleans, processes, and extracts features from fluorescent microscopy images. There's also the STAN inference models based on theoretical work from Camley et. al. There's also code for generating fake cell shapes fro…

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Name		Name	Last commit message	Last commit date
Latest commit History 2 Commits
Generating shapes with Fourier modes		Generating shapes with Fourier modes
correlation.py		correlation.py
extract_back_mek_edges.py		extract_back_mek_edges.py
extract_ratio_bd_vel.py		extract_ratio_bd_vel.py
fit_ratio_bd.py		fit_ratio_bd.py
stan_models.py		stan_models.py
view_all.py		view_all.py
visualize.py		visualize.py