Bioinformatics Arsenal

My personal collection of references for Data Science and Bioinformatics

[WARNING] At the current state, this project is just a collection of notes from my studies [WARNING]

Useful links

• The Elements of Bioinformatics: An index of bioinformatics tools, arranged just like a periodic table

Tutorials

Bioinformatics

• De Novo Assembly Tutorial (Versão pt-br)

Libraries

Python

• Pandas DataFrames

Concepts

• k-mer

Programs

SRA Toolkit

• prefatch: Download SRA data locally;

Format conversion

• fastq-dump: Convert fastq;

Genome Assembly

De Novo

• abyss;
• spades;
• velvet;

Assembly analysis

• quast.py;