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except e._NO_TRACEBACK as ex:
> raise ex.with_traceback(None)
E psycopg.errors.UndefinedColumn: column default_pipeline_name__sample.collection_of_images does not exist
E LINE 1: ...itch_value, default_pipeline_name__sample.md5sum, default_pi...
E ^
venv/lib/python3.10/site-packages/psycopg/cursor.py:732: UndefinedColumn
Double checking the db, it appears that column is indeed not being created during table creation.
The text was updated successfully, but these errors were encountered:
Ok, I think there might be something else going on here. If I remove the collection of images from my test and the recursive schema, I get the same error but for the next complex object, e.g output_file.
Oh, its our check to determine if the dependencies are satisfied. It creates an initial table using a different schema than the test: pipestat report --c 'tests/data/config.yaml' -i 'name_of_something' -v 'test_value' -r 'dependency_value'"
So, this causes issues with the very first test IF you are running them individually (and the schema in the test is not the same as the dependency test). I actually ran into this issue last week and did not realize/remember I had reverted the checks back to their original state.
donaldcampbelljr
changed the title
arrays (e.g. collection_of_images) errors when using db_backend
Dependency check causes pytest failures when running individual tests.
Apr 23, 2024
Using a complex output schema:
and attempting to report a value:
I see an error during testing:
Double checking the db, it appears that column is indeed not being created during table creation.
The text was updated successfully, but these errors were encountered: