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A python package for segmentation of fluorescent nucleus, and measure the area of nucleus and the mean intensity per nucleus. This package uses stardist (https://github.com/stardist/stardist) for segmentation and napari (https://github.com/napari/napari) for visualization.

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PyNucSeg

A python package for segmentation of fluorescent nucleus, and measure the area of nucleus and the mean intensity per nucleus. This package uses stardist (https://github.com/stardist/stardist) for segmentation, and napari (https://github.com/napari/napari) for visualization.

Installation

Run the follwing to install:

pip install pynucseg

Import

from pynucseg import ReferenceImage

About

A python package for segmentation of fluorescent nucleus, and measure the area of nucleus and the mean intensity per nucleus. This package uses stardist (https://github.com/stardist/stardist) for segmentation and napari (https://github.com/napari/napari) for visualization.

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