TDFpy

basic pip package to handle Bruker's .tdf and .tdfbin files.

How to install

• pip install tdfpy

or

• git clone https://github.com/pgarrett-scripps/tdfpy.git
• cd tdfpy
• pip install .

How to access analysis.tdf db

• from tdfpy import PandasTdf
• pd_tdf = PandasTdf('path/to/analysis.tdf')
• pd_tdf.precursors -> returns pd.DataFrame containing Precursors table
• pd_tdf.frames -> returns pd.DataFrame containing Frames table
• pd_tdf.properties -> returns pd.DataFrame containing Properties table

How to access analysis.tdf_bin db

• from tdfpy import TimsData
• td = TimsData('path/to/dfolder')
• td.readPasefMsMsForFrame(1) -> return msms spectra for first msms frame