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Basically, when a dehosted nanopore fastq file is empty (0 reads) in the minimap2 process, the fast5-dehost-regenerate.sh script fails to run
Either need to change the two processes (regenerateFastqFiles and regenerateFast5s_MM2) or find a way to filter the regenerateFastqFiles tuple on fastq count
The text was updated successfully, but these errors were encountered:
Basically, when a dehosted nanopore fastq file is empty (0 reads) in the minimap2 process, the fast5-dehost-regenerate.sh script fails to run
Either need to change the two processes (regenerateFastqFiles and regenerateFast5s_MM2) or find a way to filter the regenerateFastqFiles tuple on fastq count
The text was updated successfully, but these errors were encountered: