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Propagate renv.lock from pharmaverse/admiralci #314

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merged 1 commit into from
Aug 10, 2023
Merged

Propagate renv.lock from pharmaverse/admiralci #314

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3 changes: 2 additions & 1 deletion .Rprofile
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Original file line number Diff line number Diff line change
@@ -1,7 +1,8 @@
# Set renv profile base on R version.
.get_dependencies <- function(project_dir) {

admdev_loc <- find.package("admiraldev", lib.loc = .libPaths(), quiet = TRUE)
adm_dev_suggests <- if (length(admdev_loc) != 0) {
adm_dev_suggests <- if(length(admdev_loc) != 0) {
renv:::renv_dependencies_discover_description(admdev_loc, fields = c("Depends", "Imports", "LinkingTo", "Suggests"))
} else {
data.frame(Packages = character(0))
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3 changes: 2 additions & 1 deletion .devcontainer/4.1/devcontainer.json
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Expand Up @@ -6,7 +6,8 @@
"containerEnv": {
"ROOT": "true",
"PASSWORD": "rstudio",
"DISABLE_AUTH": "true"
"DISABLE_AUTH": "true",
"RENV_AUTOLOADER_ENABLED": "false"
},
"features": {
"ghcr.io/rocker-org/devcontainer-features/r-rig:1": {
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3 changes: 2 additions & 1 deletion .devcontainer/4.2/devcontainer.json
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Expand Up @@ -6,7 +6,8 @@
"containerEnv": {
"ROOT": "true",
"PASSWORD": "rstudio",
"DISABLE_AUTH": "true"
"DISABLE_AUTH": "true",
"RENV_AUTOLOADER_ENABLED": "false"
},
"features": {
"ghcr.io/rocker-org/devcontainer-features/r-rig:1": {
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3 changes: 2 additions & 1 deletion .devcontainer/devcontainer.json
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Expand Up @@ -6,7 +6,8 @@
"containerEnv": {
"ROOT": "true",
"PASSWORD": "rstudio",
"DISABLE_AUTH": "true"
"DISABLE_AUTH": "true",
"RENV_AUTOLOADER_ENABLED": "false"
},
"features": {
"ghcr.io/rocker-org/devcontainer-features/r-rig:1": {
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2 changes: 1 addition & 1 deletion .devcontainer/postCreateCommand.sh
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@@ -1,5 +1,5 @@
#!/bin/bash

R -q -e 'renv::activate(profile = paste(R.version$major, substr(R.version$minor, 1, 1), sep = ".")); renv::restore(); staged.dependencies::install_deps(staged.dependencies::dependency_table(project = ".", verbose = 1), verbose = 1);'
R -q -e 'renv::restore(lockfile = file.path("renv", "profiles", paste(R.version$major, substr(R.version$minor, 1, 1), sep = "."), "renv.lock")); staged.dependencies::install_deps(staged.dependencies::dependency_table(project = ".", verbose = 1), verbose = 1);'

jq --arg folder "$(pwd)/" '. + { "initial_working_directory": $folder }' .devcontainer/rstudio-prefs.json > ~/.config/rstudio/rstudio-prefs.json