annotation_parser.py

phenopolis · Jun 13, 2017 · 5c6efd9 · 5c6efd9
1 parent c10ed7d
commit 5c6efd9
Showing 1 changed file with 3 additions and 2 deletions.
diff --git a/python/annotation_parser.py b/python/annotation_parser.py
@@ -180,8 +180,9 @@ def cadd(d):
         continue
     if 'transcript_consequences' not in d:
         #eprint(d['variant_id']+' NOT CODING')
-        print('ERROR:',d['variantId']+' NOT CODING')
-        continue
+        d['transcript_consequences']=[]
+        print(d['variantId']+' NOT CODING')
+        #continue
     clean(d,'cadd')
     clean(d,'kaviar')
     clean(d,'exac_nfe')