bulk_import.sh

python/bulk_import.sh

@@ -0,0 +1,24 @@
+
+export JAVA_HOME="/share/apps/java/"
+
+cd /home/rmhanpo/neo4j-community-3.1.1/
+
+sort -u -o import/Transcript.csv import/Transcript.csv
+sort -u -o import/Gene.csv import/Gene.csv 
+sort -u -o import/TranscriptVariant.csv import/TranscriptVariant.csv 
+
+rm -f data/databases/graph.db/*
+
+./bin/neo4j-admin import --database graph.db \
+--id-type string \
+--nodes:Transcript import/Transcript-header.csv,import/Transcript.csv \
+--nodes:TranscriptVariant import/TranscriptVariant-header.csv,import/TranscriptVariant.csv \
+--nodes:Gene import/Gene-header.csv,import/Gene.csv \
+--nodes:GeneticVariant import/GeneticVariant-header.csv,import/GeneticVariant.csv \
+--nodes:Person import/Person.csv \
+--relationships:GeneticVariantToGene import/GeneticVariantToGene.csv \
+--relationships:GeneticVariantToTranscriptVariant import/GeneticVariantToTranscriptVariant.csv \
+--relationships:TranscriptToGene import/TranscriptToGene.csv \
+--relationships:HomVariantToPerson import/HomVariantToPerson.csv \
+--relationships:HetVariantToPerson import/HetVariantToPerson.csv 
+