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phuse GT Package for Publication Quality Tables from R

https://www.phuse.eu/sde20-chicago

Theme: What’s in Your Toolbox? Sharing Practical Ideas for Putting Data Science to Work

Chicago, IL Thursday, 25th June 2020

Live Presentation is here:

https://colorado.rstudio.com/rsc/GT_Clinical_Trial_Tables/GT-Tables-Clinical.html#1

Examples are here:

Basic Examples in RStudio Cloud

  1. https://rstudio.cloud/project/779965

  2. OpenFDA Examples:

R Notebook: https://colorado.rstudio.com/rsc/content/6848/GT_Workflow.nb.html

RMD Dashboard https://colorado.rstudio.com/rsc/content/6849/1-dashboard.html

Traditional RMD https://colorado.rstudio.com/rsc/content/6850/philsdrugreport.html

  1. Table 14-1.02 Summary of End of Study Data

https://colorado.rstudio.com/rsc/content/6851/viewer-rpubs-718475a647c6.html

Notes for 3: To obtain the data for this repository, you can download the data from the PHUSE Github Repository, using the links below for ADaM and SDTM data:

https://github.com/phuse-org/phuse-scripts/blob/master/data/adam/TDF_ADaM_v1.0.zip

https://github.com/phuse-org/phuse-scripts/blob/master/data/sdtm/TDF_SDTM_v1.0%20.zip

This repository was programmed using R 3.6. For further system information, see our session information in this repo.

Work built on top of:

https://gt.rstudio.com/

https://github.com/atorus-research/CDISC_pilot_replication

https://williamnoble.shinyapps.io/the_future_of_clinical_tfls/

Thank you

Richard Iannone, William Noble, Michael Stackhouse, Yilong Zhang, Sean Lopp, Shannon Hagerty

R 3.6.2 used

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