Merge pull request #77 from phyloref/release/v1.0.0

This PR creates release JPhyloRef v1.0.0 by updating the version number and the CHANGELOG.

CHANGELOG.md

@@ -4,6 +4,10 @@ Based on the suggestion at https://keepachangelog.com/en/1.0.0/.
 
 ## [Unreleased]
 
+## [1.0.0] - 2021-04-15
+- Improved README by adding badges and build and execution instructions.
+- Removed FaCT++ JNI reasoner (JFact is still included.)
+
 ## [0.4.0] - 2021-02-03
 - Updated JPhyloRef to use model 2.0 expectations, encoded as logical expressions
   on the phylogeny node, rather than comparing labels or using text-based properties.
@@ -52,7 +56,8 @@ Based on the suggestion at https://keepachangelog.com/en/1.0.0/.
 - Initial release, with support for testing phyloreferences expressed in OWL
   and stored in RDF/XML.
 
-[Unreleased]: https://github.com/phyloref/jphyloref/compare/v0.4.0...HEAD
+[Unreleased]: https://github.com/phyloref/jphyloref/compare/v1.0.0...HEAD
+[1.0.0]: https://github.com/phyloref/jphyloref/releases/tag/v1.0.0
 [0.4.0]: https://github.com/phyloref/jphyloref/releases/tag/v0.4.0
 [0.3.1]: https://github.com/phyloref/jphyloref/releases/tag/v0.3.1
 [0.3]: https://github.com/phyloref/jphyloref/releases/tag/v0.3

README.md

@@ -28,7 +28,7 @@ JPhyloRef can be built from source by running `mvn package` from the root direct
 for example:
 
 ```
-$ java -jar target/jphyloref-0.4.0.jar test src/test/resources/phylorefs/dummy1.owl
+$ java -jar target/jphyloref-1.0.0.jar test src/test/resources/phylorefs/dummy1.owl
 ```
 
 You can also download any published version of this software directly from Maven
@@ -38,7 +38,7 @@ If you have [Coursier] installed, you can download and run JPhyloRef in one step
 by running:
 
 ```
-$ coursier launch org.phyloref:jphyloref:0.4.0 -- test input.owl
+$ coursier launch org.phyloref:jphyloref:1.0.0 -- test input.owl
 ```
 
 # Command line options

pom.xml

@@ -4,7 +4,7 @@
 
     <groupId>org.phyloref</groupId>
     <artifactId>jphyloref</artifactId>
-    <version>0.4.0</version>
+    <version>1.0.0</version>
     <packaging>jar</packaging>
 
     <name>JPhyloRef</name>

src/main/java/org/phyloref/jphyloref/JPhyloRef.java

@@ -27,7 +27,7 @@ public class JPhyloRef {
   private static final Logger logger = LoggerFactory.getLogger(JPhyloRef.class);
 
   /** Version of JPhyloRef. */
-  public static final String VERSION = "0.4.0";
+  public static final String VERSION = "1.0.0";
 
   /** List of all commands included in JPhyloRef. */
   private List<Command> commands =