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21 Open 35 Closed
21 Open 35 Closed
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Issues list

Improve tests for normalization
#141 opened Jun 18, 2024 by gaurav
Add tests for normalizing Phyx files and phylogenies
#140 opened May 8, 2024 by gaurav
Remove status tracking code from PhylorefWrapper
#135 opened Jul 5, 2023 by gaurav
Add methods to return a normalized representation of wrappers
#134 opened Jun 21, 2023 by gaurav
Add support for per-phyloreference contributors
#132 opened May 24, 2023 by gaurav Phyx.js v1.1.0
Add support for per-phylogeny nomenclatural code
#121 opened Dec 14, 2022 by gaurav Phyx.js v1.1.0
@gaurav
Document that PhylogenyWrapper.getNodeLabels() and .getParsedNewick() may throw an Error
#116 opened Mar 28, 2022 by gaurav Phyx.js v1.1.0
3
toRDF() without providing a base IRI doesn't produce phylorefs and phylogenies
#113 opened Jan 25, 2022 by gaurav
1 of 3 tasks
@gaurav
Add support for running tutorial notebooks in MyBinder
#105 opened Aug 25, 2021 by gaurav
@gaurav
Allow tests to continue working when the Open Tree synthetic tree version changes
#101 opened Jul 27, 2021 by gaurav
Identify and remove redundant component class generation
#90 opened Mar 17, 2021 by gaurav
1
Replace CDAO:has_Ancestor expression with phyloref:has_outside_TU
#83 opened Mar 8, 2021 by gaurav
1
Centralize setup/teardown code in the test suite
#82 opened Mar 7, 2021 by gaurav
JSON-LD files generated from Phyx files unnecessarily need to refer to phyloref:Phyloreference
#74 opened Feb 12, 2021 by gaurav
Add support for Open Tree of Life MRCA call
#45 opened Mar 4, 2020 by gaurav
1
Export owlterms as constants
#44 opened Jan 28, 2020 by gaurav
Deprecate nameString in favor of hasName names with nomenclatural codes
#40 opened Sep 16, 2019 by gaurav
1
Add support for shape-based testing of JSON-LD/OWL output programming only No discussion necessary; just pure programming needed testing
#34 opened Aug 7, 2019 by gaurav
Move CitationWrapper into this library or a separate NPM package programming only No discussion necessary; just pure programming needed
#15 opened May 15, 2019 by gaurav
Add support for name-parsing libraries when parsing scientific names programming only No discussion necessary; just pure programming needed
#7 opened Feb 27, 2019 by gaurav
Remove 'has' prefix from JSON-LD terms programming only No discussion necessary; just pure programming needed
#35 opened Aug 1, 2018 by gaurav
3 of 4 tasks
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