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scaler-output.nexml
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scaler-output.nexml
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<nex:nexml xmlns="http://www.nexml.org/2009"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:nex="http://www.nexml.org/2009"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:dc="http://purl.org/dc/elements/1.1/" version="0.9"
xmlns:cdao="http://purl.org/obo/cdao/2012-06-06/cdao.owl"
xmlns:dla="http://www.datelife.org/vocabulary/datelifeannotation.owl"
xmlns:dac="http://www.fossilrecord.net/dateaclade/"
xsi:schemaLocation="http://www.nexml.org/2009 http://www.nexml.org/2009/nexml.xsd" generator="Bio::Phylo::Project v.0.45_1660" about="#nl1">
<meta xsi:type="nex:LiteralMeta" content="2012-06-07T17:19:19" id="ma11" datatype="xsd:date" property="dc:date"/>
<meta xsi:type="nex:LiteralMeta" content="2012-06-07T17:20:20" id="ma12" datatype="xsd:date" property="dla:analysisdate"/>
<otus id="os12">
<otu label="Rattus_rattus" id="ou13">
<meta rel="pt:uri" href="http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=180362" xsi:type="nex:ResourceMeta" id="uri7" />
<meta rel="pt:uri" href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=10117" xsi:type="nex:ResourceMeta" id="uri8" />
</otu>
<otu label="Mus_musculus" id="ou14">
<meta rel="pt:uri" href="http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=180366" xsi:type="nex:ResourceMeta" id="uri3" />
<meta rel="pt:uri" href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=10090" xsi:type="nex:ResourceMeta" id="uri4" />
</otu>
<otu label="Homo_sapiens" id="ou15">
<meta rel="pt:uri" href="http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=180092" xsi:type="nex:ResourceMeta" id="uri1" />
<meta rel="pt:uri" href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=9606" xsi:type="nex:ResourceMeta" id="uri2" />
</otu>
<otu label="Pan_paniscus" id="ou16">
<meta rel="pt:uri" href="http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=573081" xsi:type="nex:ResourceMeta" id="uri5" />
<meta rel="pt:uri" href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=9597" xsi:type="nex:ResourceMeta" id="uri6" />
</otu>
</otus>
<trees otus="os12" id="ts2">
<tree xsi:type="nex:FloatTree" id="te3">
<meta xsi:type="nex:LiteralMeta" content="DateLife 0.1" id="ma13" datatype="xsd:string" property="dla:branchLengthService"/>
<meta xsi:type="nex:LiteralMeta"
content="@article{bininda07,author = {Bininda-Emonds, Olaf R. P. and Cardillo, Marcel and Jones, Kate E. and Macphee, Ross D. E. and Beck, Robin M. D. and Grenyer, Richard and Price, Samantha A. and Vos, Rutger A. and Gittleman, John L. and Purvis, Andy},
day = {29},
doi = {10.1038/nature05634},
journal = {Nature},
number = {7135},
pages = {507--512},
volume = {446},
year = {2007}
}"
id = "ma14"
datatype="xsd:string" property="dla:branchLengthSourceTreeCitation"/>
<node root="true" id="ne4">
<meta xsi:type="nex:LiteralMeta" content="91.8" id="ma40" datatype="xsd:float" property="dla:nodeAge"/>
<meta xsi:type="nex:LiteralMeta" content="Euarchontoglires" id="ma41" datatype="xsd:string" property="dla:taxonomicName"/>
<meta xsi:type="nex:LiteralMeta" content="Heomys" id="ma42" datatype="xsd:string" property="dla:fossilSpecimenName"/>
<meta xsi:type="nex:LiteralMeta" content="61.5-61.9" id="ma43" datatype="xsd:string" property="dla:minimumAge"/>
<meta xsi:type="nex:LiteralMeta" content="98.7-100.5" id="ma44" datatype="xsd:string" property="dla:maximumAge"/>
<meta xsi:type="nex:LiteralMeta"
content="@Article{benton_donoghue2007,author = {M. J. Benton and P. C. J. Donoghue},title= {Paleontological evidence to date the tree of life},journal = {Mol. Biol. Evol.},year = {2007},volume = {24},pages = {26--53}}"
id="ma45"
datatype="xsd:string"
property="dla:validationCitation"
/>
<meta xsi:type="nex:ResourceMeta" rel="dac:clade-human-rat.html" id="ma46" property="dla:fcdbEntry"/>
</node>
<node id="ne5">
<meta xsi:type="nex:LiteralMeta" content="29.1" id="ma20" datatype="xsd:float" property="dla:nodeAge"/>
<meta xsi:type="nex:LiteralMeta" content="Murinae" id="ma21" datatype="xsd:string" property="dla:taxonomicName"/>
<meta xsi:type="nex:LiteralMeta" content="Progonomys" id="ma22" datatype="xsd:string" property="dla:fossilSpecimenName"/>
<meta xsi:type="nex:LiteralMeta" content="11" id="ma23" datatype="xsd:string" property="dla:minimumAge"/>
<meta xsi:type="nex:LiteralMeta" content="12.3" id="ma24" datatype="xsd:string" property="dla:maximumAge"/>
<meta xsi:type="nex:LiteralMeta" content="Warning - node age exceeds soft maximum" id="ma25" datatype="xsd:string" property="dla:nodeSpecificErrors"/>
<meta xsi:type="nex:LiteralMeta"
content="@Article{benton_donoghue2007,author = {M. J. Benton and P. C. J. Donoghue},title= {Paleontological evidence to date the tree of life},journal = {Mol. Biol. Evol.},year = {2007},volume = {24},pages = {26--53}}"
id="ma26"
datatype="xsd:string"
property="dla:validationCitation"
/>
<meta xsi:type="nex:ResourceMeta" rel="dac:clade-mouse-rat.html" id="ma27" property="dla:fcdbEntry"/>
</node>
<node id="ne8">
<meta xsi:type="nex:LiteralMeta" content="8.6" id="ma30" datatype="xsd:float" property="dla:nodeAge"/>
<meta xsi:type="nex:LiteralMeta" content="Hominini" id="ma31" datatype="xsd:string" property="dla:taxonomicName"/>
<meta xsi:type="nex:LiteralMeta" content="Sahelanthropus" id="ma32" datatype="xsd:string" property="dla:fossilSpecimenName"/>
<meta xsi:type="nex:LiteralMeta" content="6.5" id="ma33" datatype="xsd:string" property="dla:minimumAge"/>
<meta xsi:type="nex:LiteralMeta" content="10.0" id="ma34" datatype="xsd:string" property="dla:maximumAge"/>
<meta xsi:type="nex:LiteralMeta"
content="@Article{benton_donoghue2007,author = {M. J. Benton and P. C. J. Donoghue},title= {Paleontological evidence to date the tree of life},journal = {Mol. Biol. Evol.},year = {2007},volume = {24},pages = {26--53}}"
id="ma36"
datatype="xsd:string"
property="dla:validationCitation"
/>
<meta xsi:type="nex:ResourceMeta" rel="dac:clade-human-chimp.html" id="ma37" property="dla:fcdbEntry"/>
</node>
<node label="Rattus_rattus" id="ne6" otu="ou13"/>
<node label="Mus_musculus" id="ne7" otu="ou14"/>
<node label="Homo_sapiens" id="ne9" otu="ou15"/>
<node label="Pan_paniscus" id="ne10" otu="ou16"/>
<edge source="ne4" length="62.7" target="ne5" id="edge5"/>
<edge source="ne4" length="83.2" target="ne8" id="edge8"/>
<edge source="ne5" length="29.1" target="ne6" id="edge6"/>
<edge source="ne5" length="29.1" target="ne7" id="edge7"/>
<edge source="ne8" length="8.6" target="ne9" id="edge9"/>
<edge source="ne8" length="8.6" target="ne10" id="edge10"/>
</tree>
</trees>
</nex:nexml>