_pkgdown.yml

templates:
  params:
    bootswatch: journal
    
reference:
  - title: Strategies
    desc:  Define the strategies.
    contents:
    - define_state
    - define_transition
    - define_part_surv
    - define_strategy
    - define_starting_values
  - title: Parameters
    contents:
    - define_parameters
  - title: Run the model
    contents:
    - run_model
    - define_init
    - define_inflow
    - summary.run_model
    - plot.run_model
  - title: Sensitivity analyses
    desc:  Run DSA or PSA
    contents:
    - define_dsa
    - run_dsa
    - define_psa
    - distributions
    - define_correlation
    - run_psa
    - export_savi
    - run_bcea
    - plot.dsa
    - plot.psa
  - title: Heterogeneity
    desc:  Assess population heterogeneity
    contents:
    - update_model
  - title: Survival data
    contents:
    - define_survival
    - define_spline_survival
    - compute_surv
    - apply_af
    - apply_hr
    - apply_or
    - apply_shift
    - add_hazards
    - mix
    - join
    - set_covariates
    - plot.surv_obj
    - summary.surv_shift
  - title: Calibration
    contents:
    - calibrate_model
    - define_calibration_fn
  - title: Convenience functions
    contents:
    - combine_probs
    - dispatch_strategy
    - get_counts
    - get_values
    - look_up
    - modify
    - probability
    - rescale_discount_rate
    - who_mortality
    - reindent_transition
  - title: Tabluar data
    contents:
    - construct_part_surv_tib
    - define_surv_table
    - load_surv_models
    - part_survs_from_surv_inputs
  - title: Other features
    contents:
    - cluster
    - heemod
    - run_model_tabular

articles:
  - title: Introduction
    contents:
    - a_introduction
    - b_time_dependency
    - j_survival
  - title: Examples
    contents:
    - c_homogeneous
    - d_non_homogeneous
  - title: Sensitivity
    contents:
    - e_probabilistic
    - f_sensitivity
  - title: Heterogeneity
    contents:
    - g_heterogeneity
  - title: Other features
    contents:
    - h_tabular
    - i_reproduction
    - k_calibration