add output argument to soilcarbon

.buildlibrary

@@ -1,4 +1,4 @@
-ValidationKey: '29714166'
+ValidationKey: '29735550'
 AutocreateReadme: yes
 AcceptedWarnings:
 - 'Warning: package .* was built under R version'

CITATION.cff

@@ -2,8 +2,8 @@ cff-version: 1.2.0
 message: If you use this software, please cite it using the metadata from this file.
 type: software
 title: 'mrmagpie: madrat based MAgPIE Input Data Library'
-version: 1.49.4
-date-released: '2024-06-15'
+version: 1.49.5
+date-released: '2024-06-16'
 abstract: Provides functions for MAgPIE country and cellular input data generation.
 authors:
 - family-names: Karstens
@@ -37,7 +37,6 @@ authors:
   given-names: Pascal
   email: pascal.sauer@pik-potsdam.de
 license: LGPL-3.0
-keywords: ~
 repository-code: https://github.com/pik-piam/mrmagpie
 doi: 10.5281/zenodo.4319612
 

DESCRIPTION

@@ -1,8 +1,8 @@
 Type: Package
 Package: mrmagpie
 Title: madrat based MAgPIE Input Data Library
-Version: 1.49.4
-Date: 2024-06-15
+Version: 1.49.5
+Date: 2024-06-16
 Authors@R: c(
     person("Kristine", "Karstens", , "karstens@pik-potsdam.de", role = c("aut", "cre")),
     person("Jan Philipp", "Dietrich", , "dietrich@pik-potsdam.de", role = "aut"),

R/fullCELLULARMAGPIE.R

@@ -473,6 +473,8 @@ fullCELLULARMAGPIE <- function(rev = numeric_version("0.1"), dev = "",
 
   if (dev == "+newSOC") {
 
+    histClimatetype <- toolLPJmLVersion(version     = lpjml[["natveg"]],
+                                        climatetype = climatetype)$baseline_hist
     calcOutput("CarbonInputMultiplier", aggregate = "region",
                round = 6, file = "f59_cinput_multiplier.cs3")
     calcOutput("CarbonInputMultiplier", inputType = "kcr", aggregate = "region",
@@ -485,9 +487,9 @@ fullCELLULARMAGPIE <- function(rev = numeric_version("0.1"), dev = "",
     calcOutput("DecayFuture", aggregate = "region", years = lpjYears,
                lpjmlNatveg = lpjml[["natveg"]], climatetype = climatetype,
                round = 6, file = "f59_topsoilc_decay.cs3")
-    calcOutput("SoilCarbon", aggregate = "region", years = "y1995",
-               lpjmlNatveg = lpjml[["natveg"]], round = 6,
-               file = "f59_topsoilc_actualstate.cs3")
+    calcOutput("SoilCarbon", aggregate = "region", years = "y1995", output = "actualstate",
+               lpjmlNatveg = lpjml[["natveg"]], climatetype = histClimatetype,
+               round = 6, file = "f59_topsoilc_actualstate.cs3")
   }
 
   ##### AGGREGATION ######

README.md

@@ -1,6 +1,6 @@
 # madrat based MAgPIE Input Data Library
 
-R package **mrmagpie**, version **1.49.4**
+R package **mrmagpie**, version **1.49.5**
 
 [![CRAN status](https://www.r-pkg.org/badges/version/mrmagpie)](https://cran.r-project.org/package=mrmagpie) [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.4319612.svg)](https://doi.org/10.5281/zenodo.4319612) [![R build status](https://github.com/pik-piam/mrmagpie/workflows/check/badge.svg)](https://github.com/pik-piam/mrmagpie/actions) [![codecov](https://codecov.io/gh/pik-piam/mrmagpie/branch/master/graph/badge.svg)](https://app.codecov.io/gh/pik-piam/mrmagpie) [![r-universe](https://pik-piam.r-universe.dev/badges/mrmagpie)](https://pik-piam.r-universe.dev/builds)
 
@@ -39,7 +39,7 @@ In case of questions / problems please contact Kristine Karstens <karstens@pik-p
 
 To cite package **mrmagpie** in publications use:
 
-Karstens K, Dietrich J, Chen D, Windisch M, Alves M, Beier F, Köberle A, v. Jeetze P, Mishra A, Humpenoeder F, Sauer P (2024). _mrmagpie: madrat based MAgPIE Input Data Library_. doi:10.5281/zenodo.4319612 <https://doi.org/10.5281/zenodo.4319612>, R package version 1.49.4, <https://github.com/pik-piam/mrmagpie>.
+Karstens K, Dietrich J, Chen D, Windisch M, Alves M, Beier F, Köberle A, v. Jeetze P, Mishra A, Humpenoeder F, Sauer P (2024). _mrmagpie: madrat based MAgPIE Input Data Library_. doi:10.5281/zenodo.4319612 <https://doi.org/10.5281/zenodo.4319612>, R package version 1.49.5, <https://github.com/pik-piam/mrmagpie>.
 
 A BibTeX entry for LaTeX users is
 
@@ -48,8 +48,8 @@ A BibTeX entry for LaTeX users is
   title = {mrmagpie: madrat based MAgPIE Input Data Library},
   author = {Kristine Karstens and Jan Philipp Dietrich and David Chen and Michael Windisch and Marcos Alves and Felicitas Beier and Alexandre Köberle and Patrick {v. Jeetze} and Abhijeet Mishra and Florian Humpenoeder and Pascal Sauer},
   year = {2024},
-  note = {R package version 1.49.4},
-  url = {https://github.com/pik-piam/mrmagpie},
+  note = {R package version 1.49.5},
   doi = {10.5281/zenodo.4319612},
+  url = {https://github.com/pik-piam/mrmagpie},
 }
 ```